ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 342.00 0.20 0.64 100.0 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 1599.00 0.93 2.97 100.0 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 79308.59 45.98 147.55 58.83 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 13154.00 7.63 24.47 88.32 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 506.00 0.29 0.94 100.0 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 2554.00 1.48 4.75 100.0 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 262.00 0.15 0.49 100.0 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 3180.00 14.67 5.92 53.45 SNHG14-323 lncRNA metanephros (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 430.00 0.32 0.80 65.45 MEG8-251 lncRNA metanephros (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 126036.00 94.38 234.49 98.37 MEG8-251 lncRNA metanephros (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 356.00 0.27 0.66 48.57 MEG8-251 lncRNA metanephros (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 1793.00 1.34 3.34 87.12 MEG8-251 lncRNA metanephros (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 108.00 0.08 0.20 100.0 MEG8-251 lncRNA metanephros (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 34565.00 64.30 64.31 90.87 SNHG14-336 lncRNA metanephros (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 16247.00 30.22 30.23 47.68 SNHG14-336 lncRNA metanephros (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 20241.00 75.27 37.66 93.47 SNHG14-341 lncRNA metanephros (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 104.00 3.77 0.19 100.0 NCL-211 retained intron metanephros (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 345.00 21.26 0.64 100.0 FMN2-209 protein coding CDS not defined metanephros (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 67.00 2.04 0.12 100.0 LINC02739-203 lncRNA metanephros (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 158.00 4.80 0.29 62.7 LINC02739-203 lncRNA metanephros (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 165.00 5.01 0.31 100.0 LINC02739-203 lncRNA metanephros (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 341.00 10.36 0.63 100.0 LINC02739-203 lncRNA metanephros (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 106.00 3.22 0.20 100.0 LINC02739-203 lncRNA metanephros (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 94.00 2.86 0.17 37.3 LINC02739-203 lncRNA metanephros (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 5.00 41.67 0.01 100.0 MIR124-1HG-216 lncRNA metanephros (Tissue)