ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 21528.00 1.73 40.05 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 301.00 0.02 0.56 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 596.00 19.43 1.11 100.0 FTX-219 lncRNA metanephros (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 1016.00 33.13 1.89 86.25 FTX-219 lncRNA metanephros (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 26.00 2.34 0.05 46.43 CTC1-214 protein coding metanephros (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 16.00 1.44 0.03 11.94 CTC1-214 protein coding metanephros (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 125.00 11.27 0.23 65.1 CTC1-214 protein coding metanephros (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 30.00 2.71 0.06 53.57 CTC1-214 protein coding metanephros (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 156.00 14.07 0.29 81.68 CTC1-214 protein coding metanephros (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 5.00 0.45 0.01 100.0 CTC1-214 protein coding metanephros (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 24.00 2.16 0.04 100.0 CTC1-214 protein coding metanephros (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 260.00 23.44 0.48 100.0 CTC1-214 protein coding metanephros (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 2912.00 2.33 5.42 70.05 ENST00000651540 lncRNA metanephros (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 1153.00 0.92 2.15 98.97 ENST00000651540 lncRNA metanephros (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 7952.00 6.36 14.79 100.0 ENST00000651540 lncRNA metanephros (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 5246.00 4.20 9.76 64.16 ENST00000651540 lncRNA metanephros (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 1775.00 1.42 3.30 100.0 ENST00000651540 lncRNA metanephros (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 1019.00 0.82 1.90 100.0 ENST00000651540 lncRNA metanephros (Tissue)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 560.00 0.45 1.04 100.0 ENST00000651540 lncRNA metanephros (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 1511.00 1.21 2.81 100.0 ENST00000651540 lncRNA metanephros (Tissue)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 3185.00 2.55 5.93 100.0 ENST00000651540 lncRNA metanephros (Tissue)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 13446.00 10.76 25.02 55.22 ENST00000651540 lncRNA metanephros (Tissue)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 8989.00 7.19 16.72 100.0 ENST00000651540 lncRNA metanephros (Tissue)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 22905.00 18.33 42.61 81.27 ENST00000651540 lncRNA metanephros (Tissue)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 2.00 0.00 0.00 100.0 ENST00000651540 lncRNA metanephros (Tissue)