ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 2049.00 19.05 3.81 42.59 HSPA9-211 retained intron metanephros (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 51375.00 68.31 95.58 100.0 DNM3OS-205 lncRNA metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 2125.00 0.17 3.95 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 195.00 0.02 0.36 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 3109.00 0.25 5.78 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 2478.00 0.20 4.61 80.56 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 10610.00 0.85 19.74 95.23 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 116.00 0.01 0.22 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 882.00 0.07 1.64 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 1528.00 0.12 2.84 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 962557.00 77.33 1790.80 99.81 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 1396.00 0.11 2.60 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 2950.00 0.24 5.49 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 2109.00 0.17 3.92 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 1863.00 0.15 3.47 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 180.00 0.01 0.33 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 409.00 0.03 0.76 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 720.00 0.06 1.34 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 13713.00 1.10 25.51 83.53 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 17963.00 1.44 33.42 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 25268.00 2.03 47.01 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 67795.00 5.45 126.13 95.51 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 46452.00 3.73 86.42 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 635.00 0.05 1.18 100.0 GAS5-230 retained intron metanephros (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 8486.00 0.68 15.79 100.0 GAS5-230 retained intron metanephros (Tissue)