ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 56924.00 96.49 105.90 98.52 ENST00000619323 lncRNA metanephros (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 298.00 12.14 0.55 100.0 SCARNA4-202 scaRNA metanephros (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 3016.00 77.39 5.61 100.0 ENST00000625572 miRNA metanephros (Tissue)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 16869.00 91.68 31.38 100.0 ENST00000628177 snoRNA metanephros (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 7500.00 91.37 13.95 100.0 ENST00000630615 snoRNA metanephros (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 57.00 44.19 0.11 100.0 DMRT2-209 protein coding metanephros (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 16.00 12.40 0.03 100.0 DMRT2-209 protein coding metanephros (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 1400.00 21.42 2.60 100.0 SNORD98-201 snoRNA metanephros (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 3931.00 60.15 7.31 100.0 SNORD98-201 snoRNA metanephros (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 171477.88 55.69 319.03 59.5 MIR106AHG-201 lncRNA metanephros (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 3710.40 1.21 6.90 43.58 MIR106AHG-201 lncRNA metanephros (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 515.00 0.17 0.96 100.0 MIR106AHG-201 lncRNA metanephros (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 4617.81 1.50 8.59 54.24 MIR106AHG-201 lncRNA metanephros (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 2409.00 54.73 4.48 100.0 MEG8-222 lncRNA metanephros (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 967.00 21.97 1.80 100.0 MEG8-222 lncRNA metanephros (Tissue)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 25372.00 12.31 47.20 93.35 SNHG14-224 lncRNA metanephros (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 87078.00 42.24 162.01 90.43 SNHG14-224 lncRNA metanephros (Tissue)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 18000.00 8.73 33.49 100.0 SNHG14-224 lncRNA metanephros (Tissue)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 22079.00 10.71 41.08 88.54 SNHG14-224 lncRNA metanephros (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 627.00 0.30 1.17 100.0 SNHG14-224 lncRNA metanephros (Tissue)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 7069.00 3.43 13.15 59.72 SNHG14-224 lncRNA metanephros (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 5705.00 2.77 10.61 73.38 SNHG14-224 lncRNA metanephros (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 5405.00 2.62 10.06 64.21 SNHG14-224 lncRNA metanephros (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 420.97 15.12 0.78 70.16 5S_rRNA.20-201 rRNA pseudogene metanephros (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 1883.00 17.51 3.50 100.0 HSPA9-211 retained intron metanephros (Tissue)