ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 123.00 0.01 0.23 100.0 C19orf48P-203 retained intron metanephros (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 15.00 0.00 0.03 100.0 C19orf48P-203 retained intron metanephros (Tissue)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 16.00 76.19 0.03 100.0 ENST00000597420 lncRNA metanephros (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 109.00 2.80 0.20 100.0 RPS11-206 retained intron metanephros (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 3046.00 78.22 5.67 100.0 RPS11-206 retained intron metanephros (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 87546.00 55.77 162.88 58.0 CARMN-209 lncRNA metanephros (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 3687.00 47.01 6.86 100.0 ENST00000602478 lncRNA metanephros (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 21.00 16.67 0.04 100.0 PPFIA1P1-201 processed pseudogene metanephros (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 1320.00 48.09 2.46 100.0 SNORD114-21-201 snoRNA metanephros (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 803.00 29.25 1.49 100.0 SNORD114-21-201 snoRNA metanephros (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 150.00 35.13 0.28 100.0 SNORD115-40-201 snoRNA metanephros (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 12784.00 98.66 23.78 100.0 MIR98-201 miRNA metanephros (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 9268.00 95.23 17.24 100.0 SNORD113-5-201 snoRNA metanephros (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 1185.00 88.24 2.20 100.0 MIR15A-201 miRNA metanephros (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 120.00 85.11 0.22 100.0 MIR376C-201 miRNA metanephros (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 481.00 53.56 0.89 100.0 SNHG21-206 retained intron metanephros (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 499.00 48.07 0.93 100.0 SNORD11B-201 snoRNA metanephros (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 3973.00 71.77 7.39 100.0 SNORD91B-201 snoRNA metanephros (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 20455.00 58.71 38.06 70.05 SNORD91A-201 snoRNA metanephros (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 13082.00 47.18 24.34 96.97 MIR486-1-201 miRNA metanephros (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 19225.00 22.31 35.77 71.62 NOP56-219 retained intron metanephros (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 1397.00 1.62 2.60 100.0 NOP56-219 retained intron metanephros (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 4421.00 5.13 8.23 100.0 NOP56-219 retained intron metanephros (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 39558.00 45.90 73.60 81.5 NOP56-219 retained intron metanephros (Tissue)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 1411.00 11.49 2.63 49.65 RNA5-8SN2-201 rRNA metanephros (Tissue)