ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 573.00 10.40 1.07 100.0 ENST00000582320 lncRNA metanephros (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 1545.00 2.31 2.87 100.0 RPL17-214 retained intron metanephros (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 29205.40 43.64 54.34 51.83 RPL17-214 retained intron metanephros (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 32832.58 49.06 61.08 53.52 RPL17-214 retained intron metanephros (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 367.00 0.04 0.68 100.0 SNORD43-201 snoRNA metanephros (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 1022521.00 99.25 1902.36 99.94 SNORD43-201 snoRNA metanephros (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 480.00 0.05 0.89 100.0 SNORD43-201 snoRNA metanephros (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 673.00 58.32 1.25 100.0 MIR151B-201 miRNA metanephros (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 630.00 2.44 1.17 100.0 SNORD3A-201 snoRNA metanephros (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 17958.00 85.83 33.41 100.0 SNORD92-201 snoRNA metanephros (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 7057.00 59.21 13.13 100.0 NSRP1-214 protein coding metanephros (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 3554.00 29.82 6.61 89.57 NSRP1-214 protein coding metanephros (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 220.00 1.29 0.41 100.0 MIR23AHG-201 lncRNA metanephros (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 3909.00 22.93 7.27 93.29 MIR23AHG-201 lncRNA metanephros (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 3079.00 18.06 5.73 91.72 MIR23AHG-201 lncRNA metanephros (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 4201.00 24.64 7.82 87.32 MIR23AHG-201 lncRNA metanephros (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 3849.00 22.58 7.16 83.8 MIR23AHG-201 lncRNA metanephros (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 44.00 50.57 0.08 100.0 ODAD3-204 nonsense mediated decay metanephros (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 217.00 0.98 0.40 100.0 VMP1-217 retained intron metanephros (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 3.00 0.01 0.01 100.0 VMP1-217 retained intron metanephros (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 12021.00 54.09 22.36 58.29 VMP1-217 retained intron metanephros (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 682.00 0.06 1.27 100.0 C19orf48P-203 retained intron metanephros (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 885081.73 82.65 1646.66 89.04 C19orf48P-203 retained intron metanephros (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 167153.51 15.61 310.98 16.05 C19orf48P-203 retained intron metanephros (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 15775.00 1.47 29.35 91.21 C19orf48P-203 retained intron metanephros (Tissue)