ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 1545.00 69.94 3.27 100.0 SNORD14C-201 snoRNA occipital lobe (Tissue)
ENST00000365391.1 ENST00000365391.1_2_82_+ 2–82 29538.00 65.52 62.53 100.0 SNORD115-44-201 snoRNA occipital lobe (Tissue)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 21.00 13.29 0.04 100.0 RNA5SP77-201 rRNA pseudogene occipital lobe (Tissue)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 11667.00 54.26 24.70 98.31 SNORD114-22-201 snoRNA occipital lobe (Tissue)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 9038.00 42.03 19.13 100.0 SNORD114-22-201 snoRNA occipital lobe (Tissue)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 10324.00 86.08 21.85 100.0 SNORD6-201 snoRNA occipital lobe (Tissue)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 877.00 7.31 1.86 100.0 SNORD6-201 snoRNA occipital lobe (Tissue)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 211.00 1.12 0.45 100.0 RNY3-201 misc RNA occipital lobe (Tissue)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 6925.00 12.38 14.66 85.3 SNORD82-201 snoRNA occipital lobe (Tissue)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 12025.62 21.49 25.46 54.11 SNORD82-201 snoRNA occipital lobe (Tissue)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 10579.71 18.91 22.40 47.61 SNORD82-201 snoRNA occipital lobe (Tissue)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 373.00 0.67 0.79 100.0 SNORD82-201 snoRNA occipital lobe (Tissue)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 214.00 0.38 0.45 100.0 SNORD82-201 snoRNA occipital lobe (Tissue)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 20919.00 37.39 44.28 98.47 SNORD82-201 snoRNA occipital lobe (Tissue)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 489.00 0.87 1.04 100.0 SNORD82-201 snoRNA occipital lobe (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 10737.00 95.86 22.73 96.81 MIR146B-201 miRNA occipital lobe (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 36.00 42.35 0.08 100.0 SNHG20-201 lncRNA occipital lobe (Tissue)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 161.00 21.21 0.34 100.0 ATP5MK-205 protein coding occipital lobe (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 107.00 14.10 0.23 100.0 ATP5MK-205 protein coding occipital lobe (Tissue)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 22.00 25.88 0.05 100.0 LINC01556-201 lncRNA occipital lobe (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 9.00 25.00 0.02 100.0 ATAD3A-202 protein coding occipital lobe (Tissue)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 611.00 49.67 1.29 71.21 TMC5-202 protein coding occipital lobe (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 9.00 27.27 0.02 100.0 ZMYM2-203 protein coding occipital lobe (Tissue)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 363.00 5.54 0.77 100.0 RNVU1-7-201 snRNA occipital lobe (Tissue)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 2225.00 56.95 4.71 100.0 SNORD24-201 snoRNA occipital lobe (Tissue)