ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000762395.1 ENST00000762395.1_325_354_+ 325–354 941.00 15.75 1.99 63.71 LINC02806-241 lncRNA occipital lobe (Tissue)
ENST00000762395.1 ENST00000762395.1_325_377_+ 325–377 159.00 2.66 0.34 100.0 LINC02806-241 lncRNA occipital lobe (Tissue)
ENST00000762395.1 ENST00000762395.1_324_357_+ 324–357 1230.00 20.59 2.60 63.93 LINC02806-241 lncRNA occipital lobe (Tissue)
ENST00000762395.1 ENST00000762395.1_307_324_+ 307–324 1.00 0.02 0.00 100.0 LINC02806-241 lncRNA occipital lobe (Tissue)
ENST00000766977.1 ENST00000766977.1_604_615_+ 604–615 605.00 50.67 1.28 100.0 EHBP1-AS1-210 lncRNA occipital lobe (Tissue)
ENST00000770398.1 ENST00000770398.1_425_437_+ 425–437 50.00 14.20 0.11 100.0 ENST00000770398 lncRNA occipital lobe (Tissue)
ENST00000770398.1 ENST00000770398.1_481_509_+ 481–509 125.00 35.51 0.26 100.0 ENST00000770398 lncRNA occipital lobe (Tissue)
ENST00000770398.1 ENST00000770398.1_425_456_+ 425–456 66.00 18.75 0.14 100.0 ENST00000770398 lncRNA occipital lobe (Tissue)
ENST00000771298.1 ENST00000771298.1_1591_1611_+ 1591–1611 31.00 0.15 0.07 100.0 ENST00000771298 lncRNA occipital lobe (Tissue)
ENST00000771298.1 ENST00000771298.1_448_479_+ 448–479 30.00 0.14 0.06 100.0 ENST00000771298 lncRNA occipital lobe (Tissue)
ENST00000771298.1 ENST00000771298.1_1591_1621_+ 1591–1621 19519.00 92.45 41.32 97.13 ENST00000771298 lncRNA occipital lobe (Tissue)
ENST00000771298.1 ENST00000771298.1_485_522_+ 485–522 9.00 0.04 0.02 100.0 ENST00000771298 lncRNA occipital lobe (Tissue)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 828.00 47.92 1.75 100.0 ENST00000772672 lncRNA occipital lobe (Tissue)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 1.00 0.06 0.00 100.0 ENST00000772672 lncRNA occipital lobe (Tissue)
ENST00000772672.1 ENST00000772672.1_91_113_+ 91–113 16.00 0.93 0.03 100.0 ENST00000772672 lncRNA occipital lobe (Tissue)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 589.00 74.65 1.25 100.0 ENST00000773843 lncRNA occipital lobe (Tissue)
ENST00000775062.1 ENST00000775062.1_1327_1402_+ 1327–1402 41.00 0.04 0.09 100.0 SNHG12-223 lncRNA occipital lobe (Tissue)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 39676.00 36.55 83.99 94.2 SNHG12-223 lncRNA occipital lobe (Tissue)
ENST00000775062.1 ENST00000775062.1_1328_1395_+ 1328–1395 68266.00 62.88 144.51 99.57 SNHG12-223 lncRNA occipital lobe (Tissue)
ENST00000776279.1 ENST00000776279.1_205_232_+ 205–232 485.00 0.03 1.03 100.0 SNHG25-206 lncRNA occipital lobe (Tissue)
ENST00000776279.1 ENST00000776279.1_161_234_+ 161–234 1182550.00 76.29 2503.29 77.02 SNHG25-206 lncRNA occipital lobe (Tissue)
ENST00000776279.1 ENST00000776279.1_161_206_+ 161–206 1440.00 0.09 3.05 100.0 SNHG25-206 lncRNA occipital lobe (Tissue)
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 181.34 0.01 0.38 55.97 SNHG25-206 lncRNA occipital lobe (Tissue)
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 314.89 0.02 0.67 57.46 SNHG25-206 lncRNA occipital lobe (Tissue)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 234.76 0.02 0.50 29.46 SNHG25-206 lncRNA occipital lobe (Tissue)