ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 327.00 0.09 0.69 100.0 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 4120.00 1.19 8.72 100.0 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 3021.00 0.88 6.40 100.0 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 2113.00 0.48 4.47 100.0 SNHG32-223 lncRNA occipital lobe (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 851.00 0.19 1.80 100.0 SNHG32-223 lncRNA occipital lobe (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 272.00 0.06 0.58 100.0 SNHG32-223 lncRNA occipital lobe (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 3517.00 0.81 7.44 59.99 SNHG32-223 lncRNA occipital lobe (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 424243.00 97.13 898.06 100.0 SNHG32-223 lncRNA occipital lobe (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 49275.00 91.31 104.31 97.01 SNHG32-227 lncRNA occipital lobe (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 814.00 1.51 1.72 100.0 SNHG32-227 lncRNA occipital lobe (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 133.00 0.25 0.28 100.0 SNHG32-227 lncRNA occipital lobe (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 216.00 0.40 0.46 100.0 SNHG32-227 lncRNA occipital lobe (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 100.00 74.07 0.21 100.0 B4GALT1-203 nonsense mediated decay occipital lobe (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 705.00 11.18 1.49 100.0 ENST00000722183 lncRNA occipital lobe (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 3170.00 50.28 6.71 90.68 ENST00000722183 lncRNA occipital lobe (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 457.00 7.25 0.97 100.0 ENST00000722183 lncRNA occipital lobe (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 109.00 79.56 0.23 100.0 MIR34BHG-202 lncRNA occipital lobe (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 48844.00 78.78 103.40 82.53 THBS3-AS1-228 lncRNA occipital lobe (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 10.00 52.63 0.02 100.0 MIR200CHG-202 lncRNA occipital lobe (Tissue)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 1.00 5.26 0.00 100.0 MIR200CHG-202 lncRNA occipital lobe (Tissue)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 1157.00 16.81 2.45 100.0 SNHG16-266 lncRNA occipital lobe (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 1918.00 27.86 4.06 100.0 SNHG16-266 lncRNA occipital lobe (Tissue)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 1189.00 17.27 2.52 100.0 SNHG16-266 lncRNA occipital lobe (Tissue)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 177.00 2.57 0.37 100.0 SNHG16-266 lncRNA occipital lobe (Tissue)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 163.00 53.97 0.35 100.0 MEG8-261 lncRNA occipital lobe (Tissue)