ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 11077.64 28.98 23.45 29.99 SNHG19-202 lncRNA occipital lobe (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 25764.90 67.40 54.54 78.65 SNHG19-202 lncRNA occipital lobe (Tissue)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 6.53 0.02 0.01 81.58 SNHG19-202 lncRNA occipital lobe (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 9378.00 27.82 19.85 100.0 MIR222HG-206 lncRNA occipital lobe (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 14043.00 41.65 29.73 76.78 MIR222HG-206 lncRNA occipital lobe (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 1132.00 3.36 2.40 100.0 MIR222HG-206 lncRNA occipital lobe (Tissue)
ENST00000688371.3 ENST00000688371.3_190_212_+ 190–212 0.95 11.81 0.00 31.5 MIR302CHG-205 lncRNA occipital lobe (Tissue)
ENST00000688371.3 ENST00000688371.3_190_210_+ 190–210 1.52 19.00 0.00 50.67 MIR302CHG-205 lncRNA occipital lobe (Tissue)
ENST00000688371.3 ENST00000688371.3_458_481_+ 458–481 1.00 12.50 0.00 100.0 MIR302CHG-205 lncRNA occipital lobe (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 3.00 2.91 0.01 100.0 RPSA-216 retained intron occipital lobe (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 2995.00 1.39 6.34 71.38 MIR99AHG-370 lncRNA occipital lobe (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 206920.00 96.02 438.02 98.62 MIR99AHG-370 lncRNA occipital lobe (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 172.00 87.76 0.36 100.0 HPS4-237 retained intron occipital lobe (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 1239.00 91.71 2.62 100.0 MEG8-253 lncRNA occipital lobe (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 95.00 27.14 0.20 100.0 MEG9-206 lncRNA occipital lobe (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 39.00 11.14 0.08 100.0 MEG9-206 lncRNA occipital lobe (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 52.00 14.86 0.11 100.0 MEG9-206 lncRNA occipital lobe (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 682.00 12.93 1.44 100.0 DNAJC5-203 nonsense mediated decay occipital lobe (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 239.00 15.56 0.51 100.0 ENST00000707189 TEC occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 1011.00 0.29 2.14 100.0 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 144479.65 41.90 305.84 46.85 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 42.00 0.01 0.09 100.0 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 590.00 0.17 1.25 100.0 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 181327.59 52.59 383.84 56.37 MIR17HG-214 lncRNA occipital lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 5971.00 1.73 12.64 100.0 MIR17HG-214 lncRNA occipital lobe (Tissue)