ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 130.00 24.03 0.28 100.0 SCARNA4-202 scaRNA occipital lobe (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 4472.00 76.26 9.47 100.0 ENST00000625572 miRNA occipital lobe (Tissue)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 14877.00 95.75 31.49 100.0 ENST00000628177 snoRNA occipital lobe (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 1942.00 93.28 4.11 100.0 ENST00000630615 snoRNA occipital lobe (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 153.00 84.53 0.32 100.0 DMRT2-209 protein coding occipital lobe (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 2.00 1.10 0.00 100.0 DMRT2-209 protein coding occipital lobe (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 503.00 9.65 1.06 100.0 SNORD98-201 snoRNA occipital lobe (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 3822.00 73.33 8.09 100.0 SNORD98-201 snoRNA occipital lobe (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 139498.63 49.17 295.30 51.75 MIR106AHG-201 lncRNA occipital lobe (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 285.61 0.10 0.60 23.0 MIR106AHG-201 lncRNA occipital lobe (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 95.00 0.03 0.20 100.0 MIR106AHG-201 lncRNA occipital lobe (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 914.19 0.32 1.94 73.61 MIR106AHG-201 lncRNA occipital lobe (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 4290.00 62.18 9.08 100.0 MEG8-222 lncRNA occipital lobe (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 1268.00 18.38 2.68 100.0 MEG8-222 lncRNA occipital lobe (Tissue)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 23065.00 7.55 48.83 94.63 SNHG14-224 lncRNA occipital lobe (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 115988.00 37.97 245.53 92.76 SNHG14-224 lncRNA occipital lobe (Tissue)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 55899.00 18.30 118.33 100.0 SNHG14-224 lncRNA occipital lobe (Tissue)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 18188.00 5.95 38.50 91.61 SNHG14-224 lncRNA occipital lobe (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 490.00 0.16 1.04 100.0 SNHG14-224 lncRNA occipital lobe (Tissue)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 6675.00 2.19 14.13 57.47 SNHG14-224 lncRNA occipital lobe (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 34014.00 11.14 72.00 79.54 SNHG14-224 lncRNA occipital lobe (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 18212.00 5.96 38.55 64.04 SNHG14-224 lncRNA occipital lobe (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 808.99 28.81 1.71 74.49 5S_rRNA.20-201 rRNA pseudogene occipital lobe (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 230.00 5.85 0.49 100.0 HSPA9-211 retained intron occipital lobe (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 676.00 17.20 1.43 34.97 HSPA9-211 retained intron occipital lobe (Tissue)