ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 36.12 0.58 0.08 58.26 RNA5-8SN2-201 rRNA occipital lobe (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 2.00 0.03 0.00 100.0 RNA5-8SN2-201 rRNA occipital lobe (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 107.00 1.71 0.23 100.0 RNA5-8SN2-201 rRNA occipital lobe (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 56.00 0.89 0.12 100.0 RNA5-8SN2-201 rRNA occipital lobe (Tissue)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 1860.00 29.65 3.94 54.48 RNA5-8SN2-201 rRNA occipital lobe (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 31.78 0.51 0.07 51.26 RNA5-8SN2-201 rRNA occipital lobe (Tissue)
ENST00000616574.2 ENST00000616574.2_44_64_+ 44–64 9.00 19.15 0.02 100.0 MIR376A1-201 miRNA occipital lobe (Tissue)
ENST00000616574.2 ENST00000616574.2_7_27_+ 7–27 9.00 19.15 0.02 100.0 MIR376A1-201 miRNA occipital lobe (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 472.00 0.02 1.00 100.0 U2.3-201 snRNA occipital lobe (Tissue)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 1065.42 0.05 2.26 37.48 U2.3-201 snRNA occipital lobe (Tissue)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 2298916.00 98.13 4866.47 99.95 U2.3-201 snRNA occipital lobe (Tissue)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 4.00 0.00 0.01 100.0 U2.3-201 snRNA occipital lobe (Tissue)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 7368.00 0.31 15.60 75.91 U2.3-201 snRNA occipital lobe (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 2342.00 0.10 4.96 39.72 U2.3-201 snRNA occipital lobe (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 1623.00 0.07 3.44 81.48 U2.3-201 snRNA occipital lobe (Tissue)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 2116.27 0.09 4.48 74.44 U2.3-201 snRNA occipital lobe (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 410.00 0.02 0.87 100.0 U2.3-201 snRNA occipital lobe (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 19.00 0.00 0.04 100.0 U2.3-201 snRNA occipital lobe (Tissue)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 50.00 0.00 0.11 100.0 U2.3-201 snRNA occipital lobe (Tissue)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 51.00 0.00 0.11 100.0 U2.3-201 snRNA occipital lobe (Tissue)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 5162.40 0.22 10.93 53.75 U2.3-201 snRNA occipital lobe (Tissue)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 3914.03 0.17 8.29 43.57 U2.3-201 snRNA occipital lobe (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 1986.00 0.08 4.20 100.0 U2.6-201 snRNA occipital lobe (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 1608.00 1.49 3.40 63.11 ENST00000619323 lncRNA occipital lobe (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 103556.00 95.75 219.21 98.51 ENST00000619323 lncRNA occipital lobe (Tissue)