ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 1997.00 70.09 4.23 100.0 ENST00000570843 lncRNA occipital lobe (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 6863.00 76.04 14.53 100.0 MIR497HG-207 lncRNA occipital lobe (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 78659.00 99.08 166.51 99.5 MIR22HG-212 lncRNA occipital lobe (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 863.00 1.06 1.83 75.44 SNORD53B-201 snoRNA occipital lobe (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 76167.00 93.98 161.23 96.43 SNORD53B-201 snoRNA occipital lobe (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 281.00 0.35 0.59 24.56 SNORD53B-201 snoRNA occipital lobe (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 166.00 76.85 0.35 100.0 ENST00000578036 lncRNA occipital lobe (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 2752.00 90.08 5.83 100.0 RPL23A-207 protein coding occipital lobe (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 1587.00 92.48 3.36 100.0 MIR744-201 miRNA occipital lobe (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 18.00 75.00 0.04 100.0 MIR378C-201 miRNA occipital lobe (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 1275.00 65.22 2.70 71.11 MIR142HG-201 lncRNA occipital lobe (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 5.00 0.26 0.01 100.0 MIR142HG-201 lncRNA occipital lobe (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 52.00 2.66 0.11 6.8 MIR142HG-201 lncRNA occipital lobe (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 1340.00 10.75 2.84 100.0 SNORD3C-201 snoRNA occipital lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 251.90 0.11 0.53 70.76 RPL23A-208 retained intron occipital lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 93.66 0.04 0.20 41.44 RPL23A-208 retained intron occipital lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 184279.00 79.63 390.09 90.11 RPL23A-208 retained intron occipital lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 45387.00 19.61 96.08 92.91 RPL23A-208 retained intron occipital lobe (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 2.00 2.60 0.00 100.0 MIR133A1HG-202 lncRNA occipital lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 4291.00 5.12 9.08 50.1 RPL17-211 retained intron occipital lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 9941.00 11.86 21.04 55.68 RPL17-211 retained intron occipital lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 213.00 0.25 0.45 100.0 RPL17-211 retained intron occipital lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 41763.00 49.84 88.41 95.63 RPL17-211 retained intron occipital lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 25038.00 29.88 53.00 96.93 RPL17-211 retained intron occipital lobe (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 2293.00 47.98 4.85 69.61 ENST00000582320 lncRNA occipital lobe (Tissue)