ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 1568.00 12.15 3.32 100.0 ENST00000554988 lncRNA occipital lobe (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 763.00 0.98 1.62 100.0 SNHG14-220 retained intron occipital lobe (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 25977.00 33.29 54.99 100.0 SNHG14-220 retained intron occipital lobe (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 48038.00 61.57 101.69 100.0 SNHG14-220 retained intron occipital lobe (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 606.00 0.78 1.28 100.0 SNHG14-220 retained intron occipital lobe (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 586.00 99.49 1.24 100.0 TEKT4P2-201 transcribed unprocessed pseudogene occipital lobe (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 304.00 0.12 0.64 100.0 RPL4-202 retained intron occipital lobe (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 301.00 0.12 0.64 100.0 RPL4-202 retained intron occipital lobe (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 240338.00 96.51 508.76 99.29 RPL4-202 retained intron occipital lobe (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 148.00 0.06 0.31 100.0 RPL4-202 retained intron occipital lobe (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 183.00 0.07 0.39 100.0 RPL4-202 retained intron occipital lobe (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 2.00 0.03 0.00 100.0 ENST00000563103 lncRNA occipital lobe (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 240.00 3.68 0.51 100.0 RPL4-207 retained intron occipital lobe (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 4679.00 71.70 9.90 100.0 RPL4-207 retained intron occipital lobe (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 753.00 51.97 1.59 92.39 ENST00000565336 lncRNA occipital lobe (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 346.00 23.88 0.73 89.41 ENST00000565336 lncRNA occipital lobe (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 166396.00 73.72 352.24 77.22 RBMX-210 retained intron occipital lobe (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 2122.00 0.94 4.49 100.0 RBMX-210 retained intron occipital lobe (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 393.00 0.17 0.83 100.0 RBMX-210 retained intron occipital lobe (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 3363.00 1.49 7.12 100.0 RBMX-210 retained intron occipital lobe (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 5148.00 70.77 10.90 100.0 RPL4-214 retained intron occipital lobe (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 241.00 3.31 0.51 100.0 RPL4-214 retained intron occipital lobe (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 318.00 3.91 0.67 100.0 POLG-DT-202 lncRNA occipital lobe (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 3342.44 41.07 7.08 72.85 POLG-DT-202 lncRNA occipital lobe (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 1645.81 20.22 3.48 37.26 POLG-DT-202 lncRNA occipital lobe (Tissue)