ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 877.00 18.35 1.86 100.0 ENST00000582320 lncRNA occipital lobe (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 439.00 9.19 0.93 100.0 ENST00000582320 lncRNA occipital lobe (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 17217.00 43.47 36.45 100.0 RPL17-214 retained intron occipital lobe (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 7897.58 19.94 16.72 44.95 RPL17-214 retained intron occipital lobe (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 11361.78 28.68 24.05 55.63 RPL17-214 retained intron occipital lobe (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 47.00 0.01 0.10 100.0 SNORD43-201 snoRNA occipital lobe (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 312789.00 99.45 662.13 99.98 SNORD43-201 snoRNA occipital lobe (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 66.00 0.02 0.14 100.0 SNORD43-201 snoRNA occipital lobe (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 370.00 45.34 0.78 100.0 MIR151B-201 miRNA occipital lobe (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 217.00 1.63 0.46 100.0 SNORD3A-201 snoRNA occipital lobe (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 16856.00 90.53 35.68 100.0 SNORD92-201 snoRNA occipital lobe (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 7211.00 65.93 15.26 100.0 NSRP1-214 protein coding occipital lobe (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 2708.00 24.76 5.73 86.46 NSRP1-214 protein coding occipital lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 67.00 1.66 0.14 100.0 MIR23AHG-201 lncRNA occipital lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 774.00 19.21 1.64 91.92 MIR23AHG-201 lncRNA occipital lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 895.00 22.21 1.89 88.44 MIR23AHG-201 lncRNA occipital lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1453.00 36.06 3.08 93.08 MIR23AHG-201 lncRNA occipital lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 241.00 5.98 0.51 43.82 MIR23AHG-201 lncRNA occipital lobe (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 18.00 33.33 0.04 100.0 ODAD3-204 nonsense mediated decay occipital lobe (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 62.00 0.39 0.13 100.0 VMP1-217 retained intron occipital lobe (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 8874.00 55.76 18.78 59.08 VMP1-217 retained intron occipital lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 255.00 0.05 0.54 100.0 C19orf48P-203 retained intron occipital lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 375449.11 78.50 794.77 84.43 C19orf48P-203 retained intron occipital lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 95414.37 19.95 201.98 20.36 C19orf48P-203 retained intron occipital lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 4799.00 1.00 10.16 91.65 C19orf48P-203 retained intron occipital lobe (Tissue)