ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 2.00 0.02 0.00 66.67 RPL5-205 retained intron occipital lobe (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 7267.00 83.67 15.38 100.0 RPL5-205 retained intron occipital lobe (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 545.00 6.28 1.15 100.0 RPL5-205 retained intron occipital lobe (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 966.00 30.11 2.04 100.0 ZBED9-AS1-201 lncRNA occipital lobe (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 13184.00 93.87 27.91 100.0 RPS3A-206 retained intron occipital lobe (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 28727.00 98.43 60.81 100.0 COX7C-203 protein coding occipital lobe (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 3575.00 4.66 7.57 89.53 RACK1-229 protein coding occipital lobe (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 808.00 1.05 1.71 100.0 RACK1-229 protein coding occipital lobe (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 50761.32 66.19 107.45 75.48 RACK1-229 protein coding occipital lobe (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 15560.12 20.29 32.94 30.12 RACK1-229 protein coding occipital lobe (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 14370.00 17.26 30.42 67.23 RACK1-230 retained intron occipital lobe (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 68023.00 81.69 143.99 97.35 RACK1-230 retained intron occipital lobe (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 8.00 10.67 0.02 100.0 RNA5SP486-201 rRNA pseudogene occipital lobe (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1399.00 84.89 2.96 100.0 SCARNA5-201 scaRNA occipital lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 5374.00 2.93 11.38 100.0 RNY4-201 misc RNA occipital lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 404.00 0.22 0.86 100.0 RNY4-201 misc RNA occipital lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 110080.00 59.98 233.02 98.28 RNY4-201 misc RNA occipital lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 9042.00 4.93 19.14 95.09 RNY4-201 misc RNA occipital lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 30.00 0.02 0.06 100.0 RNY4-201 misc RNA occipital lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 710.00 0.39 1.50 58.1 RNY4-201 misc RNA occipital lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 28937.00 15.77 61.26 88.12 RNY4-201 misc RNA occipital lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 614.00 0.33 1.30 100.0 RNY4-201 misc RNA occipital lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 2533.00 1.38 5.36 56.78 RNY4-201 misc RNA occipital lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 239.00 0.13 0.51 100.0 RNY4-201 misc RNA occipital lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 121.00 0.07 0.26 27.69 RNY4-201 misc RNA occipital lobe (Tissue)