ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 55.00 0.05 0.12 37.67 RPL13A-212 retained intron occipital lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 86867.00 81.86 183.88 98.48 RPL13A-212 retained intron occipital lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 123.00 0.12 0.26 100.0 RPL13A-212 retained intron occipital lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 3.00 0.00 0.01 100.0 RPL13A-212 retained intron occipital lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 6986.00 6.58 14.79 70.05 RPL13A-212 retained intron occipital lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 78.00 0.07 0.17 100.0 RPL13A-212 retained intron occipital lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 960.00 0.90 2.03 100.0 RPL13A-212 retained intron occipital lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 12.00 0.01 0.03 100.0 RPL13A-212 retained intron occipital lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 418.00 5.93 0.88 100.0 RPL7A-207 protein coding CDS not defined occipital lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 4243.00 60.24 8.98 87.38 RPL7A-207 protein coding CDS not defined occipital lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 241.00 3.42 0.51 100.0 RPL7A-207 protein coding CDS not defined occipital lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 1.00 0.01 0.00 100.0 RPL7A-207 protein coding CDS not defined occipital lobe (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 1248.00 4.20 2.64 57.09 RN7SL2-201 misc RNA occipital lobe (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 1448.00 4.88 3.07 100.0 RN7SL2-201 misc RNA occipital lobe (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 4819.00 11.20 10.20 93.94 NOP56-217 protein coding CDS not defined occipital lobe (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 29173.00 67.83 61.76 81.77 NOP56-217 protein coding CDS not defined occipital lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 568.00 1.15 1.20 100.0 RABGGTB-213 protein coding CDS not defined occipital lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 449.00 0.91 0.95 100.0 RABGGTB-213 protein coding CDS not defined occipital lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 153.00 0.31 0.32 41.35 RABGGTB-213 protein coding CDS not defined occipital lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 20320.00 41.21 43.01 91.04 RABGGTB-213 protein coding CDS not defined occipital lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 22359.00 45.34 47.33 96.07 RABGGTB-213 protein coding CDS not defined occipital lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 63.00 0.13 0.13 100.0 RABGGTB-213 protein coding CDS not defined occipital lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 217.00 0.44 0.46 58.65 RABGGTB-213 protein coding CDS not defined occipital lobe (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 3733.00 11.31 7.90 100.0 GNL3-211 retained intron occipital lobe (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 27352.00 82.85 57.90 100.0 GNL3-211 retained intron occipital lobe (Tissue)