ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 308.00 0.10 0.65 100.0 MT-TE-201 Mt tRNA occipital lobe (Tissue)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 258208.00 87.18 546.59 92.42 MT-TE-201 Mt tRNA occipital lobe (Tissue)
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 688.00 0.23 1.46 100.0 MT-TE-201 Mt tRNA occipital lobe (Tissue)
ENST00000387459.1 ENST00000387459.1_1_62_+ 1–62 643.00 0.22 1.36 76.73 MT-TE-201 Mt tRNA occipital lobe (Tissue)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 1.00 100.00 0.00 100.0 MIR196A1-201 miRNA occipital lobe (Tissue)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 1674.00 26.65 3.54 100.0 MT-RNR1-201 Mt rRNA occipital lobe (Tissue)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 2902.00 81.11 6.14 100.0 MIR454-201 miRNA occipital lobe (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 365.00 69.13 0.77 100.0 MIR501-201 miRNA occipital lobe (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 8777.00 93.94 18.58 100.0 MIR769-201 miRNA occipital lobe (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 19.00 65.52 0.04 100.0 KRTAP19-1-201 protein coding occipital lobe (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 1400.00 17.50 2.96 100.0 MIR708-201 miRNA occipital lobe (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 35.00 83.33 0.07 100.0 MIR509-3-201 miRNA occipital lobe (Tissue)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 46.00 50.55 0.10 100.0 MIR543-201 miRNA occipital lobe (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 475.00 97.14 1.01 100.0 MIR301B-201 miRNA occipital lobe (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 1796.00 56.00 3.80 83.19 RNU1-82P-201 snRNA occipital lobe (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 7.00 0.08 0.01 100.0 SNORD66-201 snoRNA occipital lobe (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 3101.00 33.90 6.56 100.0 SNORD66-201 snoRNA occipital lobe (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 2709.00 29.62 5.73 83.77 SNORD66-201 snoRNA occipital lobe (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 405.00 4.43 0.86 100.0 SNORD66-201 snoRNA occipital lobe (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 389.00 77.96 0.82 100.0 U3.17-201 snoRNA occipital lobe (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 1456.00 50.03 3.08 100.0 SNORD17-201 snoRNA occipital lobe (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 50.00 63.29 0.11 100.0 SNORD72-201 snoRNA occipital lobe (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 3035.00 80.38 6.42 100.0 SNORD70B-201 snoRNA occipital lobe (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 11627.00 82.45 24.61 96.19 RNY4P18-201 misc RNA occipital lobe (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 1006.00 1.05 2.13 16.91 SNORD90-201 snoRNA occipital lobe (Tissue)