ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 92863.00 97.04 196.58 100.0 SNORD90-201 snoRNA occipital lobe (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 1346.00 1.09 2.85 100.0 SNORD69-201 snoRNA occipital lobe (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 117451.00 94.78 248.63 100.0 SNORD69-201 snoRNA occipital lobe (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 1133.00 0.91 2.40 100.0 SNORD69-201 snoRNA occipital lobe (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 848.00 0.68 1.80 100.0 SNORD69-201 snoRNA occipital lobe (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 1336.00 56.47 2.83 65.55 SNORD70-201 snoRNA occipital lobe (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 1851.00 68.73 3.92 80.48 B4GALNT2-202 protein coding occipital lobe (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 155.00 5.76 0.33 100.0 B4GALNT2-202 protein coding occipital lobe (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 3947.00 90.40 8.36 100.0 NDE1-202 protein coding occipital lobe (Tissue)
ENST00000401172.1 ENST00000401172.1_46_67_+ 46–67 6.00 100.00 0.01 100.0 MIR208B-201 miRNA occipital lobe (Tissue)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 187.00 72.76 0.40 100.0 MIR450B-201 miRNA occipital lobe (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 344.00 53.83 0.73 100.0 MIR887-201 miRNA occipital lobe (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 2250.00 92.48 4.76 100.0 MIR889-201 miRNA occipital lobe (Tissue)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 3705.00 83.43 7.84 100.0 SNORD111-201 snoRNA occipital lobe (Tissue)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 1438.00 64.14 3.04 84.44 SNORD88A-201 snoRNA occipital lobe (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 366.00 96.83 0.77 100.0 MIR548K-201 miRNA occipital lobe (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 170.00 49.56 0.36 100.0 MIR320B2-201 miRNA occipital lobe (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 8918.00 93.82 18.88 100.0 MIR1271-201 miRNA occipital lobe (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 13.00 0.05 0.03 100.0 SNORD100-201 snoRNA occipital lobe (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 22548.00 88.94 47.73 100.0 SNORD100-201 snoRNA occipital lobe (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1146.00 4.52 2.43 100.0 SNORD100-201 snoRNA occipital lobe (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 234.00 0.92 0.50 100.0 SNORD100-201 snoRNA occipital lobe (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 2000.00 74.46 4.23 100.0 SNORD111B-201 snoRNA occipital lobe (Tissue)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 1331.00 47.08 2.82 100.0 RNU2-36P-201 snRNA occipital lobe (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 81.00 2.87 0.17 100.0 RNU2-36P-201 snRNA occipital lobe (Tissue)