ENCFF001RMC

Library Details

Organism: Homo Sapiens
Biosample: temporal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGD
Description: Part of ENCODE experiment ENCSR000AGD. The libraries contained in this experiment come from human fetal temporal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 23467.09 37.06 48.03 39.95 SNHG19-202 lncRNA temporal lobe (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 35185.84 55.57 72.02 69.26 SNHG19-202 lncRNA temporal lobe (Tissue)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 11.19 0.02 0.02 93.24 SNHG19-202 lncRNA temporal lobe (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 12971.00 26.25 26.55 100.0 MIR222HG-206 lncRNA temporal lobe (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 28448.00 57.58 58.23 88.8 MIR222HG-206 lncRNA temporal lobe (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 445.00 0.90 0.91 100.0 MIR222HG-206 lncRNA temporal lobe (Tissue)
ENST00000688371.3 ENST00000688371.3_190_212_+ 190–212 2.84 16.68 0.01 40.5 MIR302CHG-205 lncRNA temporal lobe (Tissue)
ENST00000688371.3 ENST00000688371.3_190_210_+ 190–210 3.04 17.88 0.01 50.67 MIR302CHG-205 lncRNA temporal lobe (Tissue)
ENST00000688371.3 ENST00000688371.3_493_514_+ 493–514 1.00 5.88 0.00 100.0 MIR302CHG-205 lncRNA temporal lobe (Tissue)
ENST00000688371.3 ENST00000688371.3_673_694_+ 673–694 3.00 17.65 0.01 100.0 MIR302CHG-205 lncRNA temporal lobe (Tissue)
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 4.00 23.53 0.01 100.0 MIR302CHG-205 lncRNA temporal lobe (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 12.00 3.34 0.02 100.0 RPSA-216 retained intron temporal lobe (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 6220.00 1.18 12.73 67.37 MIR99AHG-370 lncRNA temporal lobe (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 504446.00 95.44 1032.47 98.53 MIR99AHG-370 lncRNA temporal lobe (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 108.00 55.96 0.22 100.0 HPS4-237 retained intron temporal lobe (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 2536.00 88.83 5.19 100.0 MEG8-253 lncRNA temporal lobe (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 309.00 20.36 0.63 100.0 MEG9-206 lncRNA temporal lobe (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 303.00 19.96 0.62 100.0 MEG9-206 lncRNA temporal lobe (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 199.00 13.11 0.41 100.0 MEG9-206 lncRNA temporal lobe (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 808.00 12.65 1.65 100.0 DNAJC5-203 nonsense mediated decay temporal lobe (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 992.00 22.34 2.03 100.0 ENST00000707189 TEC temporal lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 200.00 0.03 0.41 100.0 MIR17HG-214 lncRNA temporal lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 333434.48 47.80 682.46 53.51 MIR17HG-214 lncRNA temporal lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 101.00 0.01 0.21 100.0 MIR17HG-214 lncRNA temporal lobe (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 1665.00 0.24 3.41 100.0 MIR17HG-214 lncRNA temporal lobe (Tissue)