ENCFF001RMA

Library Details

Organism: Homo Sapiens
Biosample: skin of body (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGA
Description: Part of ENCODE experiment ENCSR000AGA. The libraries contained in this experiment come from human fetal skin tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 7687.00 9.08 18.94 100.0 ENST00000582320 lncRNA skin of body (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 8250.00 9.74 20.32 100.0 ENST00000582320 lncRNA skin of body (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 2588.00 2.94 6.38 100.0 RPL17-214 retained intron skin of body (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 34424.13 39.11 84.80 46.72 RPL17-214 retained intron skin of body (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 48989.62 55.66 120.68 60.53 RPL17-214 retained intron skin of body (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 1639.00 0.31 4.04 100.0 SNORD43-201 snoRNA skin of body (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 526239.00 98.19 1296.37 99.96 SNORD43-201 snoRNA skin of body (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 1070.00 0.20 2.64 100.0 SNORD43-201 snoRNA skin of body (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 438.00 42.28 1.08 100.0 MIR151B-201 miRNA skin of body (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 173.00 0.76 0.43 100.0 SNORD3A-201 snoRNA skin of body (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 24531.00 91.32 60.43 100.0 SNORD92-201 snoRNA skin of body (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 11451.00 65.20 28.21 100.0 NSRP1-214 protein coding skin of body (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 3832.00 21.82 9.44 80.54 NSRP1-214 protein coding skin of body (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 568.00 0.71 1.40 100.0 MIR23AHG-201 lncRNA skin of body (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 17097.00 21.40 42.12 92.45 MIR23AHG-201 lncRNA skin of body (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 35235.00 44.11 86.80 94.42 MIR23AHG-201 lncRNA skin of body (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 7926.00 9.92 19.53 83.45 MIR23AHG-201 lncRNA skin of body (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 6737.00 8.43 16.60 74.29 MIR23AHG-201 lncRNA skin of body (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 30.00 49.18 0.07 100.0 MIR122HG-201 lncRNA skin of body (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 29.00 34.52 0.07 100.0 ODAD3-204 nonsense mediated decay skin of body (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 664.00 0.61 1.64 100.0 VMP1-217 retained intron skin of body (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 29.00 0.03 0.07 100.0 VMP1-217 retained intron skin of body (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 61415.00 56.77 151.29 61.17 VMP1-217 retained intron skin of body (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 732.00 0.07 1.80 100.0 C19orf48P-203 retained intron skin of body (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 762857.02 73.93 1879.28 81.22 C19orf48P-203 retained intron skin of body (Tissue)