ENCFF001RMA

Library Details

Organism: Homo Sapiens
Biosample: skin of body (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGA
Description: Part of ENCODE experiment ENCSR000AGA. The libraries contained in this experiment come from human fetal skin tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 1227.00 4.40 3.02 87.14 TMEM107-204 protein coding skin of body (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 2829.00 10.15 6.97 56.31 TMEM107-204 protein coding skin of body (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 4155.00 62.44 10.24 88.88 SNHG16-201 lncRNA skin of body (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 1492.00 22.42 3.68 100.0 SNHG16-201 lncRNA skin of body (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 12.00 10.81 0.03 100.0 SNHG14-207 lncRNA skin of body (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 83823.00 84.69 206.50 96.96 SNORD105B-201 snoRNA skin of body (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 6614.00 59.89 16.29 81.02 SNORD121B-201 snoRNA skin of body (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 35.00 0.04 0.09 100.0 SNORD127-201 snoRNA skin of body (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 88407.00 94.54 217.79 99.33 SNORD127-201 snoRNA skin of body (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 113051.00 95.83 278.50 100.0 SNORD42B-201 snoRNA skin of body (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 56.00 0.51 0.14 100.0 RNY4P25-201 misc RNA skin of body (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 2439.00 66.15 6.01 100.0 SNORD121A-201 snoRNA skin of body (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 8555.00 70.13 21.08 86.14 SNORD126-201 snoRNA skin of body (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 2966.00 24.31 7.31 68.85 SNORD126-201 snoRNA skin of body (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 49100.00 91.96 120.96 95.86 SNORD124-201 snoRNA skin of body (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 48.00 2.22 0.12 100.0 SNHG12-201 retained intron skin of body (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 16182.00 32.52 39.86 100.0 RPL3-212 retained intron skin of body (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 21695.00 43.59 53.45 94.13 RPL3-212 retained intron skin of body (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 31213.00 97.41 76.89 100.0 SMC1A-204 retained intron skin of body (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 31275.00 84.58 77.05 97.99 RABGGTB-208 protein coding CDS not defined skin of body (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 7372.00 41.18 18.16 75.99 DDX39B-219 retained intron skin of body (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 1184.00 6.61 2.92 100.0 DDX39B-219 retained intron skin of body (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1348.00 7.53 3.32 100.0 DDX39B-219 retained intron skin of body (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 8829.00 76.41 21.75 100.0 RPS8-206 protein coding CDS not defined skin of body (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 1418.00 1.80 3.49 100.0 RPL13-207 retained intron skin of body (Tissue)