ENCFF001RLY

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 12463.70 26.46 35.56 27.43 SNHG19-202 lncRNA diencephalon (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 32761.60 69.55 93.47 80.27 SNHG19-202 lncRNA diencephalon (Tissue)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 11.19 0.02 0.03 93.24 SNHG19-202 lncRNA diencephalon (Tissue)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 0.72 0.00 0.00 72.05 SNHG19-202 lncRNA diencephalon (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 13428.00 35.62 38.31 100.0 MIR222HG-206 lncRNA diencephalon (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 17160.00 45.51 48.96 83.86 MIR222HG-206 lncRNA diencephalon (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 1107.00 2.94 3.16 100.0 MIR222HG-206 lncRNA diencephalon (Tissue)
ENST00000688371.3 ENST00000688371.3_458_485_+ 458–485 2.00 11.11 0.01 100.0 MIR302CHG-205 lncRNA diencephalon (Tissue)
ENST00000688371.3 ENST00000688371.3_190_212_+ 190–212 0.95 5.25 0.00 23.63 MIR302CHG-205 lncRNA diencephalon (Tissue)
ENST00000688371.3 ENST00000688371.3_190_210_+ 190–210 2.28 12.67 0.01 76.0 MIR302CHG-205 lncRNA diencephalon (Tissue)
ENST00000688371.3 ENST00000688371.3_493_514_+ 493–514 1.00 5.56 0.00 100.0 MIR302CHG-205 lncRNA diencephalon (Tissue)
ENST00000688371.3 ENST00000688371.3_673_694_+ 673–694 4.00 22.22 0.01 100.0 MIR302CHG-205 lncRNA diencephalon (Tissue)
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 4.00 22.22 0.01 100.0 MIR302CHG-205 lncRNA diencephalon (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 7.00 4.90 0.02 100.0 RPSA-216 retained intron diencephalon (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1681.00 1.70 4.80 78.59 MIR99AHG-370 lncRNA diencephalon (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 94960.00 95.80 270.91 98.96 MIR99AHG-370 lncRNA diencephalon (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 105.00 88.24 0.30 100.0 HPS4-237 retained intron diencephalon (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 7092.00 92.07 20.23 100.0 MEG8-253 lncRNA diencephalon (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 904.00 19.59 2.58 100.0 MEG9-206 lncRNA diencephalon (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 836.00 18.11 2.39 100.0 MEG9-206 lncRNA diencephalon (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 1105.00 23.94 3.15 100.0 MEG9-206 lncRNA diencephalon (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 685.00 13.37 1.95 100.0 DNAJC5-203 nonsense mediated decay diencephalon (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 574.00 25.69 1.64 100.0 ENST00000707189 TEC diencephalon (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 117.00 0.10 0.33 100.0 MIR17HG-214 lncRNA diencephalon (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 65141.03 57.39 185.84 63.36 MIR17HG-214 lncRNA diencephalon (Tissue)