ENCFF001RLY

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 66001.04 53.23 188.29 61.79 SNHG5-273 lncRNA diencephalon (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 4886.00 3.94 13.94 87.81 SNHG5-273 lncRNA diencephalon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 118.00 0.10 0.34 100.0 SNHG5-273 lncRNA diencephalon (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1713.00 1.38 4.89 100.0 SNHG5-273 lncRNA diencephalon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 28.00 0.02 0.08 100.0 SNHG5-273 lncRNA diencephalon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 1780.00 1.44 5.08 99.55 SNHG5-273 lncRNA diencephalon (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 3435.00 1.97 9.80 82.45 SNHG14-323 lncRNA diencephalon (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 1168699.00 95.51 3334.19 99.53 MEG8-251 lncRNA diencephalon (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 2371.00 0.19 6.76 53.09 MEG8-251 lncRNA diencephalon (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 2947.00 0.24 8.41 62.16 MEG8-251 lncRNA diencephalon (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 28094.00 2.30 80.15 93.86 MEG8-251 lncRNA diencephalon (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 1772.00 0.14 5.06 100.0 MEG8-251 lncRNA diencephalon (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 33674.00 23.74 96.07 48.85 SNHG14-336 lncRNA diencephalon (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 102434.00 72.21 292.23 89.87 SNHG14-336 lncRNA diencephalon (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 32698.00 73.03 93.28 96.61 SNHG14-341 lncRNA diencephalon (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 16.00 1.71 0.05 100.0 NCL-211 retained intron diencephalon (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 1563.00 5.29 4.46 100.0 FMN2-209 protein coding CDS not defined diencephalon (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 31.00 0.46 0.09 100.0 LINC02739-203 lncRNA diencephalon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 131.00 1.92 0.37 62.09 LINC02739-203 lncRNA diencephalon (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 464.00 6.81 1.32 100.0 LINC02739-203 lncRNA diencephalon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 896.00 13.15 2.56 100.0 LINC02739-203 lncRNA diencephalon (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 587.00 8.62 1.67 100.0 LINC02739-203 lncRNA diencephalon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 80.00 1.17 0.23 37.91 LINC02739-203 lncRNA diencephalon (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 31665.00 86.27 90.34 100.0 MIR124-1HG-216 lncRNA diencephalon (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 147.00 16.57 0.42 100.0 SNHG10-212 lncRNA diencephalon (Tissue)