ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 2608.00 4.30 4.78 100.0 7SK.1-201 misc RNA spinal cord (Tissue)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 1097.00 39.88 2.01 100.0 SNORD14C-201 snoRNA spinal cord (Tissue)
ENST00000365391.1 ENST00000365391.1_2_82_+ 2–82 40341.00 47.64 73.97 100.0 SNORD115-44-201 snoRNA spinal cord (Tissue)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 85.00 5.30 0.16 100.0 RNA5SP77-201 rRNA pseudogene spinal cord (Tissue)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 53389.00 34.86 97.90 100.0 SNORD114-22-201 snoRNA spinal cord (Tissue)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 92091.00 60.14 168.86 99.56 SNORD114-22-201 snoRNA spinal cord (Tissue)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 1863.00 5.83 3.42 100.0 SNORD6-201 snoRNA spinal cord (Tissue)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 26772.00 83.85 49.09 100.0 SNORD6-201 snoRNA spinal cord (Tissue)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 1931.00 5.12 3.54 100.0 RNY3-201 misc RNA spinal cord (Tissue)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 80273.00 63.34 147.19 97.12 SNORD82-201 snoRNA spinal cord (Tissue)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 593.00 0.47 1.09 100.0 SNORD82-201 snoRNA spinal cord (Tissue)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 7582.00 5.98 13.90 88.04 SNORD82-201 snoRNA spinal cord (Tissue)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 11833.37 9.34 21.70 50.07 SNORD82-201 snoRNA spinal cord (Tissue)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 12074.40 9.53 22.14 51.09 SNORD82-201 snoRNA spinal cord (Tissue)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 834.00 0.66 1.53 100.0 SNORD82-201 snoRNA spinal cord (Tissue)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 559.00 0.44 1.03 100.0 SNORD82-201 snoRNA spinal cord (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 80241.00 93.98 147.13 95.69 MIR146B-201 miRNA spinal cord (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 460.00 47.72 0.84 100.0 SNHG20-201 lncRNA spinal cord (Tissue)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 232.00 10.59 0.43 100.0 ATP5MK-205 protein coding spinal cord (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 529.00 24.14 0.97 100.0 ATP5MK-205 protein coding spinal cord (Tissue)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 10.00 2.84 0.02 100.0 LINC01556-201 lncRNA spinal cord (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 118.00 64.13 0.22 100.0 ATAD3A-202 protein coding spinal cord (Tissue)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 9314.00 44.76 17.08 67.67 TMC5-202 protein coding spinal cord (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 48.00 48.98 0.09 100.0 ZMYM2-203 protein coding spinal cord (Tissue)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 3876.00 20.66 7.11 100.0 RNVU1-7-201 snRNA spinal cord (Tissue)