ENCFF001RLX

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 10028.38 4.06 18.39 54.68 U2.3-201 snRNA spinal cord (Tissue)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 5142.89 2.08 9.43 43.65 U2.3-201 snRNA spinal cord (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 9773.00 3.94 17.92 100.0 U2.6-201 snRNA spinal cord (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 1966.00 0.84 3.60 46.72 ENST00000619323 lncRNA spinal cord (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 226685.00 96.66 415.66 98.54 ENST00000619323 lncRNA spinal cord (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 317.00 12.28 0.58 100.0 SCARNA4-202 scaRNA spinal cord (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 2641.00 77.54 4.84 100.0 ENST00000625572 miRNA spinal cord (Tissue)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 28711.00 91.97 52.65 100.0 ENST00000628177 snoRNA spinal cord (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 3378.00 89.13 6.19 100.0 ENST00000630615 snoRNA spinal cord (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 86.00 18.26 0.16 100.0 DMRT2-209 protein coding spinal cord (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 42.00 8.92 0.08 100.0 DMRT2-209 protein coding spinal cord (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 1044.00 12.37 1.91 100.0 SNORD98-201 snoRNA spinal cord (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 4948.00 58.60 9.07 100.0 SNORD98-201 snoRNA spinal cord (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 126591.26 36.19 232.13 40.23 MIR106AHG-201 lncRNA spinal cord (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 1126.02 0.32 2.06 16.77 MIR106AHG-201 lncRNA spinal cord (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 790.00 0.23 1.45 100.0 MIR106AHG-201 lncRNA spinal cord (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 5097.48 1.46 9.35 75.9 MIR106AHG-201 lncRNA spinal cord (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 938.00 7.84 1.72 100.0 MEG8-222 lncRNA spinal cord (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 5981.00 49.97 10.97 100.0 MEG8-222 lncRNA spinal cord (Tissue)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 28649.00 9.16 52.53 94.87 SNHG14-224 lncRNA spinal cord (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 108861.00 34.80 199.61 88.75 SNHG14-224 lncRNA spinal cord (Tissue)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 20935.00 6.69 38.39 100.0 SNHG14-224 lncRNA spinal cord (Tissue)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 535.00 0.17 0.98 84.25 SNHG14-224 lncRNA spinal cord (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 920.00 0.29 1.69 100.0 SNHG14-224 lncRNA spinal cord (Tissue)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 7615.00 2.43 13.96 42.66 SNHG14-224 lncRNA spinal cord (Tissue)