ENCFF001RLW

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 6.00 6.19 0.02 100.0 RNA5SP77-201 rRNA pseudogene occipital lobe (Tissue)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 4394.00 37.56 14.24 100.0 SNORD114-22-201 snoRNA occipital lobe (Tissue)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 6895.00 58.94 22.35 98.64 SNORD114-22-201 snoRNA occipital lobe (Tissue)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 767.00 6.42 2.49 100.0 SNORD6-201 snoRNA occipital lobe (Tissue)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 10574.00 88.45 34.27 100.0 SNORD6-201 snoRNA occipital lobe (Tissue)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 223.00 2.10 0.72 100.0 RNY3-201 misc RNA occipital lobe (Tissue)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 7159.79 16.26 23.20 39.29 SNORD82-201 snoRNA occipital lobe (Tissue)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 343.00 0.78 1.11 100.0 SNORD82-201 snoRNA occipital lobe (Tissue)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 254.00 0.58 0.82 100.0 SNORD82-201 snoRNA occipital lobe (Tissue)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 4987.00 11.33 16.16 85.79 SNORD82-201 snoRNA occipital lobe (Tissue)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 207.00 0.47 0.67 100.0 SNORD82-201 snoRNA occipital lobe (Tissue)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 16289.00 36.99 52.79 98.06 SNORD82-201 snoRNA occipital lobe (Tissue)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 11200.94 25.44 36.30 61.46 SNORD82-201 snoRNA occipital lobe (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 4866.00 96.09 15.77 97.24 MIR146B-201 miRNA occipital lobe (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 14.00 22.58 0.05 100.0 SNHG20-201 lncRNA occipital lobe (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 78.00 12.64 0.25 100.0 ATP5MK-205 protein coding occipital lobe (Tissue)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 114.00 18.48 0.37 100.0 ATP5MK-205 protein coding occipital lobe (Tissue)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 19.00 20.88 0.06 100.0 LINC01556-201 lncRNA occipital lobe (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 5.00 22.73 0.02 100.0 ATAD3A-202 protein coding occipital lobe (Tissue)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 1196.00 57.06 3.88 71.49 TMC5-202 protein coding occipital lobe (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 14.00 56.00 0.05 100.0 ZMYM2-203 protein coding occipital lobe (Tissue)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 210.00 4.71 0.68 100.0 RNVU1-7-201 snRNA occipital lobe (Tissue)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 3602.00 69.79 11.67 100.0 SNORD24-201 snoRNA occipital lobe (Tissue)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 419.00 62.54 1.36 100.0 Y_RNA.389-201 misc RNA occipital lobe (Tissue)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 136.00 0.18 0.44 100.0 SNORD101-201 snoRNA occipital lobe (Tissue)