ENCFF001RLW

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_32_+ 1–32 37.00 13.21 0.12 24.18 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 1402.00 55.55 4.54 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 3.00 0.12 0.01 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 21.00 21.43 0.07 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 151.00 71.90 0.49 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 57.00 37.01 0.18 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 26.00 0.14 0.08 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 23.00 0.13 0.07 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 15.00 0.08 0.05 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 33.00 0.18 0.11 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 115.00 0.63 0.37 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 16.00 0.09 0.05 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 3740.00 6.32 12.12 96.94 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 41.00 0.07 0.13 74.55 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 13.00 0.02 0.04 50.0 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 247.00 16.52 0.80 39.9 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 78.00 93.98 0.25 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 42.00 24.00 0.14 93.33 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 39.00 81.25 0.13 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 32.00 0.99 0.10 21.92 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 114.00 3.52 0.37 78.08 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 1234.00 38.06 4.00 79.92 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 2227.56 53.16 7.22 72.94 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 108.00 2.58 0.35 58.06 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 940.29 22.44 3.05 32.98 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA occipital lobe (Tissue)