ENCFF001RLW

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 9063.00 90.86 29.37 100.0 SNHG6-204 retained intron occipital lobe (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 26376.00 55.52 85.48 82.29 MIR151A-201 miRNA occipital lobe (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 14068.00 29.61 45.59 100.0 MIR151A-201 miRNA occipital lobe (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 499.00 86.78 1.62 100.0 DENND3-221 protein coding occipital lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 288.00 0.02 0.93 100.0 WDR74-204 protein coding occipital lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 103.00 0.01 0.33 100.0 WDR74-204 protein coding occipital lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 39.00 0.00 0.13 66.1 WDR74-204 protein coding occipital lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 10.00 0.00 0.03 100.0 WDR74-204 protein coding occipital lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 9.00 0.00 0.03 52.94 WDR74-204 protein coding occipital lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 1016.00 0.09 3.29 69.73 WDR74-204 protein coding occipital lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 203.00 0.02 0.66 100.0 WDR74-204 protein coding occipital lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 8.00 0.00 0.03 47.06 WDR74-204 protein coding occipital lobe (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 11316.00 88.23 36.67 100.0 HSPA8-211 retained intron occipital lobe (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 1072.00 24.78 3.47 100.0 SCARNA9-201 lncRNA occipital lobe (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 74235.00 96.85 240.58 100.0 TAF1D-215 retained intron occipital lobe (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 436.00 0.57 1.41 100.0 TAF1D-215 retained intron occipital lobe (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 155.00 4.01 0.50 100.0 HSPA8-215 retained intron occipital lobe (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 2954.00 76.51 9.57 100.0 HSPA8-215 retained intron occipital lobe (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 27.00 0.70 0.09 100.0 HSPA8-215 retained intron occipital lobe (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 293.00 31.24 0.95 100.0 RPS2-215 retained intron occipital lobe (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 469.00 84.50 1.52 86.06 ENST00000548801 lncRNA occipital lobe (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 1065.00 11.07 3.45 100.0 ENST00000554988 lncRNA occipital lobe (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 3707.00 38.55 12.01 100.0 ENST00000554988 lncRNA occipital lobe (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 26.00 0.27 0.08 100.0 ENST00000554988 lncRNA occipital lobe (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 489.00 0.70 1.58 100.0 SNHG14-220 retained intron occipital lobe (Tissue)