ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 148.00 2.58 0.50 100.0 LINC02739-203 lncRNA spinal cord (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 51.00 0.89 0.17 76.12 LINC02739-203 lncRNA spinal cord (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 8002.00 91.86 27.18 100.0 MIR124-1HG-216 lncRNA spinal cord (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 268.00 16.63 0.91 100.0 SNHG10-212 lncRNA spinal cord (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 32104.26 36.74 109.07 38.54 SNHG19-202 lncRNA spinal cord (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 50753.81 58.08 172.42 71.02 SNHG19-202 lncRNA spinal cord (Tissue)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 10.26 0.01 0.03 85.47 SNHG19-202 lncRNA spinal cord (Tissue)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 2.16 0.00 0.01 72.05 SNHG19-202 lncRNA spinal cord (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 3754.00 26.58 12.75 100.0 MIR222HG-206 lncRNA spinal cord (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 7407.00 52.44 25.16 82.36 MIR222HG-206 lncRNA spinal cord (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 90.00 0.64 0.31 100.0 MIR222HG-206 lncRNA spinal cord (Tissue)
ENST00000688371.3 ENST00000688371.3_458_485_+ 458–485 1.00 7.14 0.00 100.0 MIR302CHG-205 lncRNA spinal cord (Tissue)
ENST00000688371.3 ENST00000688371.3_190_212_+ 190–212 0.95 6.75 0.00 47.25 MIR302CHG-205 lncRNA spinal cord (Tissue)
ENST00000688371.3 ENST00000688371.3_190_210_+ 190–210 1.52 10.86 0.01 76.0 MIR302CHG-205 lncRNA spinal cord (Tissue)
ENST00000688371.3 ENST00000688371.3_493_514_+ 493–514 1.00 7.14 0.00 100.0 MIR302CHG-205 lncRNA spinal cord (Tissue)
ENST00000688371.3 ENST00000688371.3_673_694_+ 673–694 2.00 14.29 0.01 100.0 MIR302CHG-205 lncRNA spinal cord (Tissue)
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 3.00 21.43 0.01 100.0 MIR302CHG-205 lncRNA spinal cord (Tissue)
ENST00000688371.3 ENST00000688371.3_458_481_+ 458–481 1.00 7.14 0.00 50.0 MIR302CHG-205 lncRNA spinal cord (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 2.00 1.35 0.01 100.0 RPSA-216 retained intron spinal cord (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 3434.00 1.35 11.67 74.72 MIR99AHG-370 lncRNA spinal cord (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 243411.00 95.76 826.92 98.85 MIR99AHG-370 lncRNA spinal cord (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 107.00 82.95 0.36 100.0 HPS4-237 retained intron spinal cord (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 2534.00 89.04 8.61 100.0 MEG8-253 lncRNA spinal cord (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 276.00 6.96 0.94 100.0 MEG9-206 lncRNA spinal cord (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 768.00 19.37 2.61 100.0 MEG9-206 lncRNA spinal cord (Tissue)