ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 57630.27 32.08 195.78 40.77 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 200.00 0.11 0.68 100.0 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 366.00 0.20 1.24 100.0 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 94160.27 52.42 319.88 62.23 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 8174.00 4.55 27.77 89.17 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 181.00 0.10 0.61 100.0 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 2015.00 1.12 6.85 100.0 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 61.00 0.03 0.21 100.0 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 1.00 0.00 0.00 50.0 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 3126.00 1.74 10.62 99.33 SNHG5-273 lncRNA spinal cord (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 2521.00 3.02 8.56 71.56 SNHG14-323 lncRNA spinal cord (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 2141.00 0.40 7.27 59.79 MEG8-251 lncRNA spinal cord (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 509397.00 94.53 1730.53 99.45 MEG8-251 lncRNA spinal cord (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 2037.00 0.38 6.92 55.2 MEG8-251 lncRNA spinal cord (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 10365.00 1.92 35.21 95.94 MEG8-251 lncRNA spinal cord (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 1600.00 0.30 5.44 100.0 MEG8-251 lncRNA spinal cord (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 49100.00 65.23 166.80 89.17 SNHG14-336 lncRNA spinal cord (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 21934.00 29.14 74.51 54.59 SNHG14-336 lncRNA spinal cord (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 14598.00 64.50 49.59 94.68 SNHG14-341 lncRNA spinal cord (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 406.00 22.92 1.38 100.0 NCL-211 retained intron spinal cord (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 778.00 10.04 2.64 100.0 FMN2-209 protein coding CDS not defined spinal cord (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 74.00 1.29 0.25 100.0 LINC02739-203 lncRNA spinal cord (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 16.00 0.28 0.05 23.88 LINC02739-203 lncRNA spinal cord (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 1488.00 25.91 5.06 100.0 LINC02739-203 lncRNA spinal cord (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 405.00 7.05 1.38 100.0 LINC02739-203 lncRNA spinal cord (Tissue)