ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 83.00 0.69 0.28 100.0 ENST00000554988 lncRNA spinal cord (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 1456.00 12.17 4.95 100.0 ENST00000554988 lncRNA spinal cord (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 617.00 0.50 2.10 100.0 SNHG14-220 retained intron spinal cord (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 760.00 0.62 2.58 100.0 SNHG14-220 retained intron spinal cord (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 52505.00 42.59 178.37 100.0 SNHG14-220 retained intron spinal cord (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 64072.00 51.97 217.67 100.0 SNHG14-220 retained intron spinal cord (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 1423.00 99.30 4.83 100.0 TEKT4P2-201 transcribed unprocessed pseudogene spinal cord (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 21.00 0.02 0.07 100.0 RPL4-202 retained intron spinal cord (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 1082.00 1.01 3.68 100.0 RPL4-202 retained intron spinal cord (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 178.00 0.17 0.60 100.0 RPL4-202 retained intron spinal cord (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 430.00 0.40 1.46 100.0 RPL4-202 retained intron spinal cord (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 97019.00 90.38 329.60 98.23 RPL4-202 retained intron spinal cord (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 4.00 0.02 0.01 100.0 ENST00000563103 lncRNA spinal cord (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 3363.00 66.27 11.42 100.0 RPL4-207 retained intron spinal cord (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 35.00 0.69 0.12 100.0 RPL4-207 retained intron spinal cord (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 18681.00 86.02 63.46 96.8 ENST00000565336 lncRNA spinal cord (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 881.00 4.06 2.99 76.41 ENST00000565336 lncRNA spinal cord (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 260994.00 82.78 886.65 86.48 RBMX-210 retained intron spinal cord (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 1335.00 0.42 4.54 100.0 RBMX-210 retained intron spinal cord (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 537.00 0.17 1.82 100.0 RBMX-210 retained intron spinal cord (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1418.00 0.45 4.82 100.0 RBMX-210 retained intron spinal cord (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 3993.00 62.80 13.57 100.0 RPL4-214 retained intron spinal cord (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 244.00 3.84 0.83 100.0 RPL4-214 retained intron spinal cord (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 13395.60 27.72 45.51 34.23 POLG-DT-202 lncRNA spinal cord (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 24310.47 50.30 82.59 59.19 POLG-DT-202 lncRNA spinal cord (Tissue)