ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 267.00 0.55 0.91 100.0 POLG-DT-202 lncRNA spinal cord (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 4384.00 66.84 14.89 100.0 ENST00000570843 lncRNA spinal cord (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 2086.00 76.02 7.09 100.0 MIR497HG-207 lncRNA spinal cord (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 331479.00 99.47 1126.11 99.69 MIR22HG-212 lncRNA spinal cord (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 91.00 0.13 0.31 25.07 SNORD53B-201 snoRNA spinal cord (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 65354.00 95.49 222.02 97.38 SNORD53B-201 snoRNA spinal cord (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 272.00 0.40 0.92 74.93 SNORD53B-201 snoRNA spinal cord (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 3594.00 95.26 12.21 100.0 ENST00000578036 lncRNA spinal cord (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 3269.00 86.53 11.11 100.0 RPL23A-207 protein coding spinal cord (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 1251.00 86.81 4.25 100.0 MIR744-201 miRNA spinal cord (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 159.00 72.60 0.54 100.0 MIR378C-201 miRNA spinal cord (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 3457.00 75.53 11.74 81.04 MIR142HG-201 lncRNA spinal cord (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 7.00 0.15 0.02 100.0 MIR142HG-201 lncRNA spinal cord (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 57.00 1.25 0.19 4.58 MIR142HG-201 lncRNA spinal cord (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 251.00 1.54 0.85 100.0 SNORD3C-201 snoRNA spinal cord (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 362.48 0.15 1.23 65.9 RPL23A-208 retained intron spinal cord (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 194.07 0.08 0.66 48.64 RPL23A-208 retained intron spinal cord (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 186749.00 79.67 634.43 90.56 RPL23A-208 retained intron spinal cord (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 43511.00 18.56 147.82 90.9 RPL23A-208 retained intron spinal cord (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 25.00 1.76 0.08 100.0 MIR133A1HG-202 lncRNA spinal cord (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 10295.00 7.88 34.97 47.8 RPL17-211 retained intron spinal cord (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 16833.00 12.88 57.19 67.25 RPL17-211 retained intron spinal cord (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 470.00 0.36 1.60 100.0 RPL17-211 retained intron spinal cord (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 41645.00 31.86 141.48 93.03 RPL17-211 retained intron spinal cord (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 56513.00 43.24 191.99 96.11 RPL17-211 retained intron spinal cord (Tissue)