ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 11969.00 3.39 40.66 88.05 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 35648.00 10.11 121.10 100.0 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 1456.00 81.89 4.95 87.08 MIR3142HG-201 lncRNA spinal cord (Tissue)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 3621.00 77.39 12.30 100.0 SNHG6-204 retained intron spinal cord (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 34283.00 42.22 116.47 100.0 MIR151A-201 miRNA spinal cord (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 39461.00 48.60 134.06 88.6 MIR151A-201 miRNA spinal cord (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 3216.00 95.86 10.93 100.0 DENND3-221 protein coding spinal cord (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 10.00 0.01 0.03 100.0 WDR74-204 protein coding spinal cord (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 23.00 0.02 0.08 65.71 WDR74-204 protein coding spinal cord (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 1998.00 1.55 6.79 71.05 WDR74-204 protein coding spinal cord (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 12.00 0.01 0.04 34.29 WDR74-204 protein coding spinal cord (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 82.00 0.06 0.28 77.36 WDR74-204 protein coding spinal cord (Tissue)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 635.00 0.49 2.16 100.0 WDR74-204 protein coding spinal cord (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 1297.00 1.00 4.41 100.0 WDR74-204 protein coding spinal cord (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 109.00 0.08 0.37 100.0 WDR74-204 protein coding spinal cord (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 10283.00 79.84 34.93 100.0 HSPA8-211 retained intron spinal cord (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 794.00 18.82 2.70 100.0 SCARNA9-201 lncRNA spinal cord (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 20589.00 86.19 69.95 100.0 TAF1D-215 retained intron spinal cord (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 317.00 1.33 1.08 100.0 TAF1D-215 retained intron spinal cord (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 2784.00 19.70 9.46 100.0 HSPA8-215 retained intron spinal cord (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 8176.00 57.87 27.78 100.0 HSPA8-215 retained intron spinal cord (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 30.00 0.21 0.10 100.0 HSPA8-215 retained intron spinal cord (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 719.00 25.74 2.44 100.0 RPS2-215 retained intron spinal cord (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 1474041.00 87.96 5007.65 89.0 ENST00000548801 lncRNA spinal cord (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 83.00 0.69 0.28 100.0 ENST00000554988 lncRNA spinal cord (Tissue)