ENCFF001RLU

Library Details

Organism: Homo Sapiens
Biosample: spinal cord (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGB
Description: Part of ENCODE experiment ENCSR000AGB. The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 9739.00 70.65 33.09 100.0 GNL3-211 retained intron spinal cord (Tissue)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 1.00 0.01 0.00 100.0 RPL5-205 retained intron spinal cord (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 6845.00 78.50 23.25 100.0 RPL5-205 retained intron spinal cord (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 362.00 4.15 1.23 100.0 RPL5-205 retained intron spinal cord (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 77.00 9.42 0.26 100.0 ZBED9-AS1-201 lncRNA spinal cord (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 13931.00 89.19 47.33 100.0 RPS3A-206 retained intron spinal cord (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 9854.00 92.12 33.48 100.0 COX7C-203 protein coding spinal cord (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 683.00 0.29 2.32 100.0 RACK1-229 protein coding spinal cord (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 44727.63 18.88 151.95 26.36 RACK1-229 protein coding spinal cord (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 176846.97 74.65 600.79 79.76 RACK1-229 protein coding spinal cord (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 3177.00 1.34 10.79 83.72 RACK1-229 protein coding spinal cord (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 68657.00 82.30 233.24 96.9 RACK1-230 retained intron spinal cord (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 13056.00 15.65 44.35 68.33 RACK1-230 retained intron spinal cord (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 11.00 5.26 0.04 100.0 RNA5SP486-201 rRNA pseudogene spinal cord (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 907.00 79.91 3.08 100.0 SCARNA5-201 scaRNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 674.00 0.19 2.29 100.0 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 251382.00 71.27 854.00 97.79 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 5298.00 1.50 18.00 92.22 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 66.00 0.02 0.22 100.0 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 1669.00 0.47 5.67 44.2 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 11969.00 3.39 40.66 88.05 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 1150.00 0.33 3.91 100.0 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 9467.00 2.68 32.16 62.46 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 594.00 0.17 2.02 100.0 RNY4-201 misc RNA spinal cord (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 450.00 0.13 1.53 60.98 RNY4-201 misc RNA spinal cord (Tissue)