ENCFF001RLT

Library Details

Organism: Homo Sapiens
Biosample: temporal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGD
Description: Part of ENCODE experiment ENCSR000AGD. The libraries contained in this experiment come from human fetal temporal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 38075.75 52.21 63.20 57.35 RPL17-214 retained intron temporal lobe (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 28171.08 38.63 46.76 47.55 RPL17-214 retained intron temporal lobe (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 415.00 0.19 0.69 100.0 SNORD43-201 snoRNA temporal lobe (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 207955.00 97.62 345.18 99.97 SNORD43-201 snoRNA temporal lobe (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 553.00 0.26 0.92 100.0 SNORD43-201 snoRNA temporal lobe (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 789.00 36.21 1.31 100.0 MIR151B-201 miRNA temporal lobe (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 690.00 1.60 1.15 100.0 SNORD3A-201 snoRNA temporal lobe (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 44833.00 92.53 74.42 100.0 SNORD92-201 snoRNA temporal lobe (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 14862.00 65.54 24.67 100.0 NSRP1-214 protein coding temporal lobe (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 4687.00 20.67 7.78 74.28 NSRP1-214 protein coding temporal lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1004.00 12.90 1.67 62.95 MIR23AHG-201 lncRNA temporal lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 4.00 0.05 0.01 100.0 MIR23AHG-201 lncRNA temporal lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1235.00 15.86 2.05 90.68 MIR23AHG-201 lncRNA temporal lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 2459.00 31.59 4.08 88.55 MIR23AHG-201 lncRNA temporal lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1809.00 23.24 3.00 83.98 MIR23AHG-201 lncRNA temporal lobe (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 1.00 3.33 0.00 100.0 MIR122HG-201 lncRNA temporal lobe (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 86.00 48.04 0.14 100.0 ODAD3-204 nonsense mediated decay temporal lobe (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 84.00 0.18 0.14 100.0 VMP1-217 retained intron temporal lobe (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 5.00 0.01 0.01 100.0 VMP1-217 retained intron temporal lobe (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 27733.00 60.11 46.03 64.69 VMP1-217 retained intron temporal lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 594.00 0.05 0.99 100.0 C19orf48P-203 retained intron temporal lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 894468.55 76.83 1484.69 85.03 C19orf48P-203 retained intron temporal lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 275362.44 23.65 457.06 24.09 C19orf48P-203 retained intron temporal lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 3730.00 0.32 6.19 86.64 C19orf48P-203 retained intron temporal lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 144.00 0.01 0.24 100.0 C19orf48P-203 retained intron temporal lobe (Tissue)