ENCFF001RLT

Library Details

Organism: Homo Sapiens
Biosample: temporal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGD
Description: Part of ENCODE experiment ENCSR000AGD. The libraries contained in this experiment come from human fetal temporal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 289.00 0.18 0.48 29.1 SNORD53B-201 snoRNA temporal lobe (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 154614.00 93.78 256.64 96.14 SNORD53B-201 snoRNA temporal lobe (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 704.00 0.43 1.17 70.9 SNORD53B-201 snoRNA temporal lobe (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 2696.00 96.53 4.47 100.0 ENST00000578036 lncRNA temporal lobe (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 2641.00 80.59 4.38 100.0 RPL23A-207 protein coding temporal lobe (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 2894.00 89.43 4.80 100.0 MIR744-201 miRNA temporal lobe (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 96.00 69.06 0.16 100.0 MIR378C-201 miRNA temporal lobe (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 1659.00 68.02 2.75 74.13 MIR142HG-201 lncRNA temporal lobe (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 10.00 0.41 0.02 100.0 MIR142HG-201 lncRNA temporal lobe (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 60.00 2.46 0.10 7.67 MIR142HG-201 lncRNA temporal lobe (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 245.00 0.61 0.41 100.0 SNORD3C-201 snoRNA temporal lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 64765.00 80.83 107.50 91.96 RPL23A-208 retained intron temporal lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 74.82 0.09 0.12 71.95 RPL23A-208 retained intron temporal lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 22.48 0.03 0.04 36.85 RPL23A-208 retained intron temporal lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 13280.00 16.58 22.04 92.2 RPL23A-208 retained intron temporal lobe (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 25.00 2.38 0.04 100.0 MIR133A1HG-202 lncRNA temporal lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 12814.00 6.32 21.27 45.62 RPL17-211 retained intron temporal lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 28465.00 14.04 47.25 59.9 RPL17-211 retained intron temporal lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 609.00 0.30 1.01 100.0 RPL17-211 retained intron temporal lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 88134.00 43.46 146.29 93.34 RPL17-211 retained intron temporal lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 63244.00 31.19 104.98 95.6 RPL17-211 retained intron temporal lobe (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 852.00 7.37 1.41 100.0 ENST00000582320 lncRNA temporal lobe (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 6732.00 58.27 11.17 75.73 ENST00000582320 lncRNA temporal lobe (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 1264.00 10.94 2.10 100.0 ENST00000582320 lncRNA temporal lobe (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 1253.00 1.72 2.08 100.0 RPL17-214 retained intron temporal lobe (Tissue)