ENCFF001RLT

Library Details

Organism: Homo Sapiens
Biosample: temporal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGD
Description: Part of ENCODE experiment ENCSR000AGD. The libraries contained in this experiment come from human fetal temporal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 384.00 13.89 0.64 100.0 ZBED9-AS1-201 lncRNA temporal lobe (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 42826.00 88.34 71.09 100.0 RPS3A-206 retained intron temporal lobe (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 28299.00 90.33 46.97 100.0 COX7C-203 protein coding temporal lobe (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 318526.49 73.73 528.71 79.83 RACK1-229 protein coding temporal lobe (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 6482.00 1.50 10.76 81.53 RACK1-229 protein coding temporal lobe (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 1194.00 0.28 1.98 100.0 RACK1-229 protein coding temporal lobe (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 72658.62 16.82 120.60 23.68 RACK1-229 protein coding temporal lobe (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 105448.00 78.11 175.03 96.79 RACK1-230 retained intron temporal lobe (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 26377.00 19.54 43.78 73.82 RACK1-230 retained intron temporal lobe (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 6.00 6.00 0.01 100.0 RNA5SP486-201 rRNA pseudogene temporal lobe (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1219.00 77.59 2.02 100.0 SCARNA5-201 scaRNA temporal lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 1042.00 0.21 1.73 100.0 RNY4-201 misc RNA temporal lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 20076.00 4.06 33.32 100.0 RNY4-201 misc RNA temporal lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 22131.00 4.48 36.73 100.0 RNY4-201 misc RNA temporal lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 1864.00 0.38 3.09 100.0 RNY4-201 misc RNA temporal lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 7080.00 1.43 11.75 45.96 RNY4-201 misc RNA temporal lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 351982.00 71.24 584.24 97.69 RNY4-201 misc RNA temporal lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 6279.00 1.27 10.42 82.63 RNY4-201 misc RNA temporal lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 41.00 0.01 0.07 100.0 RNY4-201 misc RNA temporal lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 1921.00 0.39 3.19 64.27 RNY4-201 misc RNA temporal lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 33908.00 6.86 56.28 95.36 RNY4-201 misc RNA temporal lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 257.00 0.05 0.43 100.0 RNY4-201 misc RNA temporal lobe (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 501.00 0.10 0.83 36.57 RNY4-201 misc RNA temporal lobe (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 1638.00 81.70 2.72 86.99 MIR3142HG-201 lncRNA temporal lobe (Tissue)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 5631.00 73.51 9.35 100.0 SNHG6-204 retained intron temporal lobe (Tissue)