ENCFF001RLT

Library Details

Organism: Homo Sapiens
Biosample: temporal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGD
Description: Part of ENCODE experiment ENCSR000AGD. The libraries contained in this experiment come from human fetal temporal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 18.00 0.01 0.03 100.0 RPL13A-212 retained intron temporal lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 12956.00 3.68 21.51 83.29 RPL13A-212 retained intron temporal lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 103.00 0.03 0.17 100.0 RPL13A-212 retained intron temporal lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 37.00 0.01 0.06 18.78 RPL13A-212 retained intron temporal lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 762.00 0.22 1.26 100.0 RPL13A-212 retained intron temporal lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 6769.00 1.92 11.24 100.0 RPL13A-212 retained intron temporal lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 3452.00 40.03 5.73 87.37 RPL7A-207 protein coding CDS not defined temporal lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 430.00 4.99 0.71 100.0 RPL7A-207 protein coding CDS not defined temporal lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 1034.00 11.99 1.72 100.0 RPL7A-207 protein coding CDS not defined temporal lobe (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 600.00 5.56 1.00 100.0 RN7SL2-201 misc RNA temporal lobe (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 383.00 3.55 0.64 59.1 RN7SL2-201 misc RNA temporal lobe (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 21275.00 63.95 35.31 86.99 NOP56-217 protein coding CDS not defined temporal lobe (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 4671.00 14.04 7.75 95.52 NOP56-217 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 18738.00 48.88 31.10 91.87 RABGGTB-213 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 11216.00 29.26 18.62 97.45 RABGGTB-213 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 79.00 0.21 0.13 100.0 RABGGTB-213 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 383.00 1.00 0.64 52.04 RABGGTB-213 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 544.00 1.42 0.90 100.0 RABGGTB-213 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 351.00 0.92 0.58 100.0 RABGGTB-213 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 353.00 0.92 0.59 47.96 RABGGTB-213 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 5611.00 15.43 9.31 100.0 GNL3-211 retained intron temporal lobe (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 24530.00 67.47 40.72 100.0 GNL3-211 retained intron temporal lobe (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 730.00 6.05 1.21 100.0 RPL5-205 retained intron temporal lobe (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 8084.00 66.98 13.42 100.0 RPL5-205 retained intron temporal lobe (Tissue)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 2.00 0.02 0.00 100.0 RPL5-205 retained intron temporal lobe (Tissue)