ENCFF001RLT

Library Details

Organism: Homo Sapiens
Biosample: temporal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGD
Description: Part of ENCODE experiment ENCSR000AGD. The libraries contained in this experiment come from human fetal temporal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1912.00 60.79 3.17 92.14 SNHG16-201 lncRNA temporal lobe (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 14257.00 9.13 23.66 100.0 SNHG14-207 lncRNA temporal lobe (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 165821.00 90.76 275.24 97.36 SNORD105B-201 snoRNA temporal lobe (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 11999.00 56.39 19.92 80.6 SNORD121B-201 snoRNA temporal lobe (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 128533.00 92.03 213.35 99.24 SNORD127-201 snoRNA temporal lobe (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 351.00 0.25 0.58 100.0 SNORD127-201 snoRNA temporal lobe (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 14535.00 92.18 24.13 100.0 SNORD42B-201 snoRNA temporal lobe (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 206.00 0.48 0.34 100.0 RNY4P25-201 misc RNA temporal lobe (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 1842.00 63.96 3.06 100.0 SNORD121A-201 snoRNA temporal lobe (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 2022.00 25.50 3.36 71.91 SNORD126-201 snoRNA temporal lobe (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 5268.00 66.44 8.74 83.54 SNORD126-201 snoRNA temporal lobe (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 45419.00 88.54 75.39 93.9 SNORD124-201 snoRNA temporal lobe (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 42.00 1.44 0.07 100.0 SNHG12-201 retained intron temporal lobe (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 10712.00 30.36 17.78 91.74 RPL3-212 retained intron temporal lobe (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 9869.00 27.97 16.38 100.0 RPL3-212 retained intron temporal lobe (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 44179.00 95.75 73.33 100.0 SMC1A-204 retained intron temporal lobe (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 11267.00 77.56 18.70 98.45 RABGGTB-208 protein coding CDS not defined temporal lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 2397.00 7.10 3.98 100.0 DDX39B-219 retained intron temporal lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 2355.00 6.98 3.91 100.0 DDX39B-219 retained intron temporal lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 14457.00 42.85 24.00 78.88 DDX39B-219 retained intron temporal lobe (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 6981.00 70.82 11.59 100.0 RPS8-206 protein coding CDS not defined temporal lobe (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 64825.00 87.30 107.60 99.24 RPL13-207 retained intron temporal lobe (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 3722.00 5.01 6.18 100.0 RPL13-207 retained intron temporal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 4950.00 0.57 8.22 58.03 EIF4A2-219 retained intron temporal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 4221.00 0.49 7.01 52.44 EIF4A2-219 retained intron temporal lobe (Tissue)