ENCFF001RLS

Library Details

Organism: Homo Sapiens
Biosample: parietal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFY
Description: Part of ENCODE experiment ENCSR000AFY. The libraries contained in this experiment come from human fetal parietal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 145.00 0.06 0.51 65.61 WDR74-204 protein coding parietal lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 12.00 0.00 0.04 100.0 WDR74-204 protein coding parietal lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 1852.00 0.71 6.55 100.0 WDR74-204 protein coding parietal lobe (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 184.00 0.07 0.65 100.0 WDR74-204 protein coding parietal lobe (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 7432.00 80.72 26.29 100.0 HSPA8-211 retained intron parietal lobe (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 791.00 19.67 2.80 100.0 SCARNA9-201 lncRNA parietal lobe (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 54828.00 90.94 193.96 100.0 TAF1D-215 retained intron parietal lobe (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 403.00 0.67 1.43 100.0 TAF1D-215 retained intron parietal lobe (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 1637.00 21.70 5.79 100.0 HSPA8-215 retained intron parietal lobe (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 4143.00 54.91 14.66 100.0 HSPA8-215 retained intron parietal lobe (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 14.00 0.19 0.05 100.0 HSPA8-215 retained intron parietal lobe (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 268.00 15.66 0.95 100.0 RPS2-215 retained intron parietal lobe (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 652.00 89.19 2.31 91.19 ENST00000548801 lncRNA parietal lobe (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 1134.00 17.34 4.01 100.0 ENST00000554988 lncRNA parietal lobe (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 120.00 1.84 0.42 100.0 ENST00000554988 lncRNA parietal lobe (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 701.00 10.72 2.48 100.0 ENST00000554988 lncRNA parietal lobe (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 56950.00 45.81 201.47 100.0 SNHG14-220 retained intron parietal lobe (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 59131.00 47.57 209.19 100.0 SNHG14-220 retained intron parietal lobe (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 1339.00 1.08 4.74 100.0 SNHG14-220 retained intron parietal lobe (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 1089.00 0.88 3.85 100.0 SNHG14-220 retained intron parietal lobe (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 2125.00 99.49 7.52 100.0 TEKT4P2-201 transcribed unprocessed pseudogene parietal lobe (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 11.00 0.01 0.04 100.0 RPL4-202 retained intron parietal lobe (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 1314.00 0.98 4.65 100.0 RPL4-202 retained intron parietal lobe (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 926.00 0.69 3.28 100.0 RPL4-202 retained intron parietal lobe (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 113033.00 84.44 399.88 98.42 RPL4-202 retained intron parietal lobe (Tissue)