ENCFF001RLS

Library Details

Organism: Homo Sapiens
Biosample: parietal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFY
Description: Part of ENCODE experiment ENCSR000AFY. The libraries contained in this experiment come from human fetal parietal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 145719.00 78.76 515.51 97.42 RPL13A-212 retained intron parietal lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 787.00 8.85 2.78 100.0 RPL7A-207 protein coding CDS not defined parietal lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 4419.00 49.70 15.63 83.63 RPL7A-207 protein coding CDS not defined parietal lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 315.00 3.54 1.11 100.0 RPL7A-207 protein coding CDS not defined parietal lobe (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 225.00 4.77 0.80 100.0 RN7SL2-201 misc RNA parietal lobe (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 454.00 9.63 1.61 79.37 RN7SL2-201 misc RNA parietal lobe (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 1957.00 8.09 6.92 93.91 NOP56-217 protein coding CDS not defined parietal lobe (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 17348.00 71.72 61.37 84.14 NOP56-217 protein coding CDS not defined parietal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 25062.00 45.94 88.66 89.19 RABGGTB-213 protein coding CDS not defined parietal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 20089.00 36.83 71.07 96.28 RABGGTB-213 protein coding CDS not defined parietal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 300.00 0.55 1.06 54.55 RABGGTB-213 protein coding CDS not defined parietal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 52.00 0.10 0.18 100.0 RABGGTB-213 protein coding CDS not defined parietal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 250.00 0.46 0.88 45.45 RABGGTB-213 protein coding CDS not defined parietal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 353.00 0.65 1.25 100.0 RABGGTB-213 protein coding CDS not defined parietal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 382.00 0.70 1.35 100.0 RABGGTB-213 protein coding CDS not defined parietal lobe (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 23216.00 70.55 82.13 100.0 GNL3-211 retained intron parietal lobe (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 4140.00 12.58 14.65 100.0 GNL3-211 retained intron parietal lobe (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 352.00 3.93 1.25 100.0 RPL5-205 retained intron parietal lobe (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 7031.00 78.56 24.87 100.0 RPL5-205 retained intron parietal lobe (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 61.00 5.37 0.22 100.0 ZBED9-AS1-201 lncRNA parietal lobe (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 24685.00 89.63 87.33 100.0 RPS3A-206 retained intron parietal lobe (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 15679.00 88.49 55.47 100.0 COX7C-203 protein coding parietal lobe (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 125518.22 72.69 444.05 79.45 RACK1-229 protein coding parietal lobe (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 3492.00 2.02 12.35 77.41 RACK1-229 protein coding parietal lobe (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 634.00 0.37 2.24 100.0 RACK1-229 protein coding parietal lobe (Tissue)