ENCFF001RLS

Library Details

Organism: Homo Sapiens
Biosample: parietal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFY
Description: Part of ENCODE experiment ENCSR000AFY. The libraries contained in this experiment come from human fetal parietal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 90948.00 91.63 321.75 99.21 SNORD127-201 snoRNA parietal lobe (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 17596.00 93.21 62.25 100.0 SNORD42B-201 snoRNA parietal lobe (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 139.00 0.63 0.49 100.0 RNY4P25-201 misc RNA parietal lobe (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 1410.00 63.51 4.99 100.0 SNORD121A-201 snoRNA parietal lobe (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 3505.00 62.94 12.40 82.63 SNORD126-201 snoRNA parietal lobe (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1682.00 30.20 5.95 74.72 SNORD126-201 snoRNA parietal lobe (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 31554.00 89.59 111.63 94.74 SNORD124-201 snoRNA parietal lobe (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 15.00 1.37 0.05 100.0 SNHG12-201 retained intron parietal lobe (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 6555.00 27.68 23.19 100.0 RPL3-212 retained intron parietal lobe (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 6684.00 28.22 23.65 93.61 RPL3-212 retained intron parietal lobe (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 12068.00 95.31 42.69 100.0 SMC1A-204 retained intron parietal lobe (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 23660.00 87.04 83.70 98.35 RABGGTB-208 protein coding CDS not defined parietal lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1023.00 6.01 3.62 100.0 DDX39B-219 retained intron parietal lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 762.00 4.48 2.70 100.0 DDX39B-219 retained intron parietal lobe (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 7038.00 41.35 24.90 75.25 DDX39B-219 retained intron parietal lobe (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 8842.00 82.15 31.28 100.0 RPS8-206 protein coding CDS not defined parietal lobe (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 89742.00 94.28 317.48 99.56 RPL13-207 retained intron parietal lobe (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 1833.00 1.93 6.48 100.0 RPL13-207 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 10793.00 1.38 38.18 49.9 EIF4A2-219 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 3.00 0.00 0.01 100.0 EIF4A2-219 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 617.00 0.08 2.18 100.0 EIF4A2-219 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 108613.00 13.90 384.24 89.46 EIF4A2-219 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 1458.00 0.19 5.16 68.29 EIF4A2-219 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 3134.00 0.40 11.09 54.98 EIF4A2-219 retained intron parietal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 26787.00 3.43 94.76 73.19 EIF4A2-219 retained intron parietal lobe (Tissue)