ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 351.00 21.84 0.72 100.0 RPSA-216 retained intron GM12878 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 370.00 4.99 0.76 94.39 MIR99AHG-370 lncRNA GM12878 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 6692.00 90.16 13.82 99.13 MIR99AHG-370 lncRNA GM12878 (Cell line)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 62675.00 98.12 129.45 100.0 HPS4-237 retained intron GM12878 (Cell line)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 3.00 7.32 0.01 100.0 MEG8-253 lncRNA GM12878 (Cell line)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 2.00 9.09 0.00 100.0 MEG9-206 lncRNA GM12878 (Cell line)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 9220.00 11.42 19.04 100.0 DNAJC5-203 nonsense mediated decay GM12878 (Cell line)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 6868.00 14.70 14.19 100.0 ENST00000707189 TEC GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 1489.00 0.11 3.08 100.0 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 4153.00 0.29 8.58 100.0 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 721616.77 51.13 1490.42 60.96 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 4614.00 0.33 9.53 100.0 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 24211.00 1.72 50.01 100.0 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 502091.17 35.58 1037.01 42.58 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 50162.00 3.55 103.60 100.0 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 16773.00 1.19 34.64 100.0 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 26932.00 1.91 55.63 100.0 MIR17HG-214 lncRNA GM12878 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 130974.00 4.11 270.51 100.0 SNHG32-223 lncRNA GM12878 (Cell line)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 7655.00 0.24 15.81 100.0 SNHG32-223 lncRNA GM12878 (Cell line)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 2644.00 0.08 5.46 100.0 SNHG32-223 lncRNA GM12878 (Cell line)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 32509.00 1.02 67.14 91.07 SNHG32-223 lncRNA GM12878 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 2980623.00 93.48 6156.14 100.0 SNHG32-223 lncRNA GM12878 (Cell line)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 141566.00 86.49 292.39 98.48 SNHG32-227 lncRNA GM12878 (Cell line)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 12928.00 7.90 26.70 100.0 SNHG32-227 lncRNA GM12878 (Cell line)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 302.00 0.18 0.62 100.0 SNHG32-227 lncRNA GM12878 (Cell line)