ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 159.00 0.05 0.33 100.0 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 36693.00 12.44 75.79 100.0 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 305.00 0.10 0.63 100.0 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 7260.00 2.46 14.99 95.05 SNHG5-273 lncRNA GM12878 (Cell line)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 29.00 2.37 0.06 93.55 SNHG14-323 lncRNA GM12878 (Cell line)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 18.00 43.90 0.04 90.0 MEG8-251 lncRNA GM12878 (Cell line)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 1.00 2.44 0.00 100.0 MEG8-251 lncRNA GM12878 (Cell line)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 60.00 31.41 0.12 54.55 SNHG14-336 lncRNA GM12878 (Cell line)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 64.00 33.51 0.13 87.67 SNHG14-336 lncRNA GM12878 (Cell line)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 99.00 34.02 0.20 90.0 SNHG14-341 lncRNA GM12878 (Cell line)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 14387.00 40.74 29.71 100.0 FMN2-209 protein coding CDS not defined GM12878 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 3221.00 1.93 6.65 100.0 LINC02739-203 lncRNA GM12878 (Cell line)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 8453.00 5.07 17.46 100.0 LINC02739-203 lncRNA GM12878 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 8899.00 5.34 18.38 36.36 LINC02739-203 lncRNA GM12878 (Cell line)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 26.00 0.02 0.05 100.0 LINC02739-203 lncRNA GM12878 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 15577.00 9.35 32.17 63.64 LINC02739-203 lncRNA GM12878 (Cell line)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 61404.00 36.85 126.82 100.0 LINC02739-203 lncRNA GM12878 (Cell line)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 463.00 22.12 0.96 100.0 SNHG10-212 lncRNA GM12878 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 2.88 0.00 0.01 72.05 SNHG19-202 lncRNA GM12878 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 130911.97 88.75 270.38 95.29 SNHG19-202 lncRNA GM12878 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 6863.11 4.65 14.17 10.23 SNHG19-202 lncRNA GM12878 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 3.73 0.00 0.01 74.59 SNHG19-202 lncRNA GM12878 (Cell line)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 2785.00 26.88 5.75 100.0 MIR222HG-206 lncRNA GM12878 (Cell line)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 3164.00 30.53 6.53 54.92 MIR222HG-206 lncRNA GM12878 (Cell line)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 284.00 2.74 0.59 100.0 MIR222HG-206 lncRNA GM12878 (Cell line)