ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362291.1 ENST00000362291.1_15_35_+ 15–35 93.00 87.74 0.19 100.0 MIR126-201 miRNA GM12878 (Cell line)
ENST00000362298.3 ENST00000362298.3_42_63_+ 42–63 1387.00 50.82 2.86 100.0 MIR374A-201 miRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_45_+ 1–45 2722.00 0.37 5.62 100.0 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_23_95_+ 23–95 22312.00 3.05 46.08 86.02 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_5_95_+ 5–95 40601.00 5.55 83.86 98.67 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_83_+ 1–83 3415.00 0.47 7.05 55.78 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 13904.00 1.90 28.72 56.67 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 5422.00 0.74 11.20 100.0 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_26_95_+ 26–95 2722.00 0.37 5.62 35.15 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 1209.00 0.17 2.50 100.0 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_15_95_+ 15–95 3034.16 0.42 6.27 50.74 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_32_95_+ 32–95 4442.00 0.61 9.17 79.61 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_56_95_+ 56–95 7490.56 1.02 15.47 50.32 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_95_+ 1–95 67591.00 9.25 139.60 99.2 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_12_95_+ 12–95 4531.00 0.62 9.36 68.94 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_83_95_+ 83–95 6033.00 0.83 12.46 52.76 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_20_95_+ 20–95 7134.00 0.98 14.73 57.18 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_32_+ 1–32 4044.00 0.55 8.35 59.55 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_58_95_+ 58–95 4174.74 0.57 8.62 52.37 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_17_95_+ 17–95 5145.34 0.70 10.63 72.5 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362400.1 ENST00000362400.1_79_95_+ 79–95 2440.00 0.33 5.04 31.11 RNA5S12-201 rRNA GM12878 (Cell line)
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 12902.00 36.56 26.65 100.0 Y_RNA.14-201 misc RNA GM12878 (Cell line)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 1287.00 15.41 2.66 100.0 RNU5E-1-201 snRNA GM12878 (Cell line)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 2707.00 0.89 5.59 44.22 RNA5SP370-201 rRNA pseudogene GM12878 (Cell line)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 1407.00 56.06 2.91 100.0 SNORA31-201 snoRNA GM12878 (Cell line)