ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 15217.00 77.97 31.43 100.0 MIR107-201 miRNA GM12878 (Cell line)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 2.00 28.57 0.00 50.0 MIR381-201 miRNA GM12878 (Cell line)
ENST00000362154.1 ENST00000362154.1_48_70_+ 48–70 77456.00 83.89 159.98 89.91 MIR103A2-201 miRNA GM12878 (Cell line)
ENST00000362155.4 ENST00000362155.4_44_64_+ 44–64 10.00 100.00 0.02 100.0 MIR369-201 miRNA GM12878 (Cell line)
ENST00000362162.1 ENST00000362162.1_14_35_+ 14–35 5766.00 26.40 11.91 100.0 MIR425-201 miRNA GM12878 (Cell line)
ENST00000362162.1 ENST00000362162.1_14_38_+ 14–38 7406.00 33.91 15.30 100.0 MIR425-201 miRNA GM12878 (Cell line)
ENST00000362168.1 ENST00000362168.1_66_87_+ 66–87 6724.00 59.69 13.89 100.0 MIR210-201 miRNA GM12878 (Cell line)
ENST00000362177.3 ENST00000362177.3_43_64_+ 43–64 154301.00 95.75 318.69 97.36 MIR378A-201 miRNA GM12878 (Cell line)
ENST00000362181.3 ENST00000362181.3_6_27_+ 6–27 1639.00 37.97 3.39 100.0 MIR361-201 miRNA GM12878 (Cell line)
ENST00000362195.3 ENST00000362195.3_48_66_+ 48–66 754.00 2.65 1.56 19.54 MIR101-2-201 miRNA GM12878 (Cell line)
ENST00000362195.3 ENST00000362195.3_49_70_+ 49–70 23613.00 83.03 48.77 88.38 MIR101-2-201 miRNA GM12878 (Cell line)
ENST00000362205.1 ENST00000362205.1_10_31_+ 10–31 270162.00 98.33 557.99 99.18 MIR26A1-201 miRNA GM12878 (Cell line)
ENST00000362212.1 ENST00000362212.1_61_83_+ 61–83 4017.00 73.04 8.30 100.0 MIR342-201 miRNA GM12878 (Cell line)
ENST00000362215.3 ENST00000362215.3_44_65_+ 44–65 378425.00 92.27 781.59 94.55 MIR148A-201 miRNA GM12878 (Cell line)
ENST00000362215.3 ENST00000362215.3_6_27_+ 6–27 5401.00 1.32 11.16 100.0 MIR148A-201 miRNA GM12878 (Cell line)
ENST00000362222.4 ENST00000362222.4_50_70_+ 50–70 13.00 100.00 0.03 100.0 MIR410-201 miRNA GM12878 (Cell line)
ENST00000362237.3 ENST00000362237.3_47_68_+ 47–68 3.00 75.00 0.01 100.0 MIR409-201 miRNA GM12878 (Cell line)
ENST00000362239.4 ENST00000362239.4_16_36_+ 16–36 9.00 81.82 0.02 100.0 MIR411-201 miRNA GM12878 (Cell line)
ENST00000362251.4 ENST00000362251.4_12_33_+ 12–33 29555.00 94.00 61.04 97.81 MIR26B-201 miRNA GM12878 (Cell line)
ENST00000362252.3 ENST00000362252.3_63_86_+ 63–86 26225.00 82.06 54.16 91.86 MIR148B-201 miRNA GM12878 (Cell line)
ENST00000362280.3 ENST00000362280.3_5_26_+ 5–26 77902.00 98.00 160.90 99.58 MIRLET7G-201 miRNA GM12878 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_21_+ 6–21 110.00 1.04 0.23 100.0 MIR30D-201 miRNA GM12878 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_29_+ 6–29 9644.00 90.82 19.92 97.36 MIR30D-201 miRNA GM12878 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_25_+ 6–25 294.00 2.77 0.61 52.88 MIR30D-201 miRNA GM12878 (Cell line)
ENST00000362291.1 ENST00000362291.1_15_35_+ 15–35 93.00 87.74 0.19 100.0 MIR126-201 miRNA GM12878 (Cell line)