ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 5145336.00 99.05 10627.11 99.72 SNORD43-201 snoRNA GM12878 (Cell line)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 1958.00 0.04 4.04 100.0 SNORD43-201 snoRNA GM12878 (Cell line)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 976.00 76.79 2.02 100.0 MIR151B-201 miRNA GM12878 (Cell line)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 356.00 1.56 0.74 100.0 SNORD3A-201 snoRNA GM12878 (Cell line)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 8393.00 71.66 17.33 100.0 SNORD92-201 snoRNA GM12878 (Cell line)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 33852.00 48.65 69.92 100.0 NSRP1-214 protein coding GM12878 (Cell line)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 20277.00 29.14 41.88 78.68 NSRP1-214 protein coding GM12878 (Cell line)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 1536.00 3.44 3.17 100.0 MIR23AHG-201 lncRNA GM12878 (Cell line)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 2161.00 4.83 4.46 77.59 MIR23AHG-201 lncRNA GM12878 (Cell line)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 29158.00 65.22 60.22 94.63 MIR23AHG-201 lncRNA GM12878 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1780.00 3.98 3.68 93.73 MIR23AHG-201 lncRNA GM12878 (Cell line)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 591.00 1.32 1.22 60.24 MIR23AHG-201 lncRNA GM12878 (Cell line)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 405.00 41.62 0.84 100.0 ODAD3-204 nonsense mediated decay GM12878 (Cell line)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 122489.00 8.41 252.99 100.0 VMP1-217 retained intron GM12878 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 5840.00 0.40 12.06 100.0 VMP1-217 retained intron GM12878 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 976859.00 67.08 2017.59 75.9 VMP1-217 retained intron GM12878 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 7580.00 0.17 15.66 100.0 C19orf48P-203 retained intron GM12878 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1500898.20 32.92 3099.94 41.17 C19orf48P-203 retained intron GM12878 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 2966383.11 65.07 6126.73 66.19 C19orf48P-203 retained intron GM12878 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 20628.00 0.45 42.60 87.81 C19orf48P-203 retained intron GM12878 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 8149.00 0.18 16.83 100.0 C19orf48P-203 retained intron GM12878 (Cell line)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 9.00 0.00 0.02 100.0 C19orf48P-203 retained intron GM12878 (Cell line)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 533.00 24.01 1.10 100.0 RPS11-206 retained intron GM12878 (Cell line)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 701.00 31.58 1.45 100.0 RPS11-206 retained intron GM12878 (Cell line)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 483.00 76.67 1.00 80.77 CARMN-209 lncRNA GM12878 (Cell line)