ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 1006.00 1.10 2.08 61.04 SNORD53B-201 snoRNA GM12878 (Cell line)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 587.00 74.21 1.21 100.0 ENST00000578036 lncRNA GM12878 (Cell line)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 32457.00 90.76 67.04 100.0 RPL23A-207 protein coding GM12878 (Cell line)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 9417.00 91.92 19.45 100.0 MIR744-201 miRNA GM12878 (Cell line)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 2689.00 80.90 5.55 100.0 MIR378C-201 miRNA GM12878 (Cell line)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 55240.00 16.94 114.09 48.8 MIR142HG-201 lncRNA GM12878 (Cell line)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 15997.00 4.91 33.04 100.0 MIR142HG-201 lncRNA GM12878 (Cell line)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 140256.00 43.01 289.68 65.02 MIR142HG-201 lncRNA GM12878 (Cell line)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 758.00 3.58 1.57 100.0 SNORD3C-201 snoRNA GM12878 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 1072.46 1.47 2.22 67.37 RPL23A-208 retained intron GM12878 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 520.76 0.72 1.08 47.47 RPL23A-208 retained intron GM12878 (Cell line)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 21472.00 29.52 44.35 61.67 RPL23A-208 retained intron GM12878 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 47915.00 65.88 98.96 94.78 RPL23A-208 retained intron GM12878 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 224.00 0.08 0.46 20.95 RPL17-211 retained intron GM12878 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 577.00 0.21 1.19 3.03 RPL17-211 retained intron GM12878 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 734.00 0.27 1.52 100.0 RPL17-211 retained intron GM12878 (Cell line)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 241863.00 89.82 499.54 99.84 RPL17-211 retained intron GM12878 (Cell line)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 14674.00 5.45 30.31 99.33 RPL17-211 retained intron GM12878 (Cell line)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 6.00 17.65 0.01 85.71 ENST00000582320 lncRNA GM12878 (Cell line)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 10.00 29.41 0.02 100.0 ENST00000582320 lncRNA GM12878 (Cell line)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 3.00 8.82 0.01 100.0 ENST00000582320 lncRNA GM12878 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 8650.00 24.61 17.87 100.0 RPL17-214 retained intron GM12878 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 6841.70 19.47 14.13 35.63 RPL17-214 retained intron GM12878 (Cell line)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 14771.72 42.03 30.51 64.76 RPL17-214 retained intron GM12878 (Cell line)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 4094.00 0.08 8.46 100.0 SNORD43-201 snoRNA GM12878 (Cell line)