ENCFF001RER

Library Details

Organism: Homo Sapiens
Biosample: GM12878 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AEJ
Description: Part of ENCODE experiment ENCSR000AEJ. The libraries contained in this experiment come from independent growths of cell line GM12878. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 485.00 0.07 1.00 100.0 RPL13A-212 retained intron GM12878 (Cell line)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 883.00 0.12 1.82 100.0 RPL13A-212 retained intron GM12878 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 244.00 0.48 0.50 100.0 RPL7A-207 protein coding CDS not defined GM12878 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 1352.00 2.65 2.79 100.0 RPL7A-207 protein coding CDS not defined GM12878 (Cell line)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 2.00 0.00 0.00 100.0 RPL7A-207 protein coding CDS not defined GM12878 (Cell line)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 36703.00 71.86 75.81 84.56 RPL7A-207 protein coding CDS not defined GM12878 (Cell line)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 176.00 0.29 0.36 100.0 RN7SL2-201 misc RNA GM12878 (Cell line)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 27462.00 44.82 56.72 61.38 RN7SL2-201 misc RNA GM12878 (Cell line)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 1.00 1.75 0.00 100.0 RGS11-208 retained intron GM12878 (Cell line)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 282.00 2.26 0.58 97.92 NOP56-217 protein coding CDS not defined GM12878 (Cell line)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 9788.00 78.38 20.22 99.0 NOP56-217 protein coding CDS not defined GM12878 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 229.00 0.07 0.47 75.33 RABGGTB-213 protein coding CDS not defined GM12878 (Cell line)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 6843.00 2.08 14.13 100.0 RABGGTB-213 protein coding CDS not defined GM12878 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 289340.00 88.03 597.60 98.8 RABGGTB-213 protein coding CDS not defined GM12878 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 75.00 0.02 0.15 24.67 RABGGTB-213 protein coding CDS not defined GM12878 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 758.00 0.23 1.57 54.73 RABGGTB-213 protein coding CDS not defined GM12878 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 737.00 0.22 1.52 100.0 RABGGTB-213 protein coding CDS not defined GM12878 (Cell line)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 2259.00 0.69 4.67 100.0 RABGGTB-213 protein coding CDS not defined GM12878 (Cell line)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 1602.00 9.51 3.31 100.0 GNL3-211 retained intron GM12878 (Cell line)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 13026.00 77.31 26.90 100.0 GNL3-211 retained intron GM12878 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 2893.00 59.67 5.98 100.0 RPL5-205 retained intron GM12878 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 976.00 20.13 2.02 100.0 RPL5-205 retained intron GM12878 (Cell line)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 1.00 0.02 0.00 100.0 RPL5-205 retained intron GM12878 (Cell line)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 5486.00 10.10 11.33 100.0 ZBED9-AS1-201 lncRNA GM12878 (Cell line)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 5873.00 75.11 12.13 100.0 RPS3A-206 retained intron GM12878 (Cell line)